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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G04040 | AT | Annotation by Michelle Graham. TAIR10: Patatin-like phospholipase family protein | chr5:1090346-1093003 FORWARD LENGTH=825 | SoyBase | E_val: 0 | ISS |
| GO:0006629 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid metabolic process | SoyBase | N/A | ISS |
| GO:0006635 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0016558 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix | SoyBase | N/A | ISS |
| GO:0019433 | GO-bp | Annotation by Michelle Graham. GO Biological Process: triglyceride catabolic process | SoyBase | N/A | ISS |
| GO:0044265 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular macromolecule catabolic process | SoyBase | N/A | ISS |
| GO:0012511 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: monolayer-surrounded lipid storage body | SoyBase | N/A | ISS |
| GO:0004806 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: triglyceride lipase activity | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| KOG2214 | KOG | Predicted esterase of the alpha-beta hydrolase superfamily | JGI | ISS | |
| PTHR11711 | Panther | ARF-RELATED | JGI | ISS | |
| PTHR11711:SF1 | Panther | ADP-RIBOSYLATION FACTOR | JGI | ISS | |
| PF01734 | PFAM | Patatin-like phospholipase | JGI | ISS | |
| PF11815 | PFAM | Domain of unknown function (DUF3336) | JGI | ISS | |
| UniRef100_G7IDS5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Patatin-like phospholipase domain-containing protein n=1 Tax=Medicago truncatula RepID=G7IDS5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233C38B | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C38B related cluster n=1 Tax=unknown RepID=UPI000233C38B | SoyBase | E_val: 0 | ISS |
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Glyma10g16530 not represented in the dataset |
Glyma10g16530 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g105200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g16530.1 sequence type=CDS gene model=Glyma10g16530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATCATATAAATAACGAGGCTAGTGTTGACCCTTTTGCGATTGGCCCTTCTAGCATTCTTGGTAGAACAATTGCTTTCAGGGTTCTCTTCTGCAAGTCTATCTCACAATTGAGGCATCATATACATTTTGTGTTGTTGGATATCTTGAAAAGATTTTGGGGATTTTGGGGACCCATTGTGTCATGGTTGCATCCAAGAAACCCGCAGGGGATATTGGCAATGATGACAATAATTGCTGTCTTGTTGAAACGTTACAGCAGTGTGAAGGTGAGGGCCGAGATAGCATATAGGCAGAATTTTTGGAGAAATATGATGCGAGCTGCATTGACCTATGAGGAGTGGGCTCATGCAGCCAAGATGATTGATAGAGAGACACCAAAGATGAATGAATCAAAAGACCTTTATGATGTGGAGTTGGTGAGTAACAAGCTTCAAGAGCTTCGCCATCGCAGGCAAGAGGGGTCTCTTAGAGATATAATATTTTGTATGCGTGCAGATCTTGTTAGGAATCTAGGTAATATGTGTAATCCAGAGCTACACAAAGGTAGGCTTCAGATGCCAAGACTAATCAAGGAGTATATTGATGAGGTATCAACTCAATTGAGAATGGTTTGCAACTCTGATTCAGAGGAGCTTGCATTGGAAGAAAAGCTTTCTTTCATGCATGAAACTAGACACGCATTTGGGAGGACTGCTTTGTTGTTAAGTGGAGGTGCTTCCCTTGGAGCTTTTCATGTTGGTGTGGTTAAAACACTGGTTGAACATAAACTTTTGCCTAGGATAATTGCTGGTTCAAGTGTAGGATCCATTATGTGTTCTATTGTTGCCACTAGGTCTTGGCCTGAGCTCCAAAGCTTTTTTGAGGATTCATTGCACTCATTACAGTTTTTTGATCAAATGGGTGGGATTTTTACAGTTGTGAAGAGGGTAACAACATATGGTGCAGTTCATGAGATCAGACAGTTGCAAATGTTGTTGAGGAATCTAACAAGCAATCTTACATTTCAAGAAGCATATGACATGACGGGTCGAATTCTCGGAATTACAGTTTGCTCCCCGAGAAAGCATGAACCACCCAGATGTCTTAACTACTTGACTTCACCTCATGTTGTTATATGGAGCGCAGTCACTGCTTCTTGTGCCTTTCCTGGCCTTTTCGAGGCTCAGGAATTGATGGCAAAGGATAGAAGTGGAGAGATTGTTCCTTACCATCCACCATTTAATTTGGGTCCTGAAAAGGGTTCCACTTCAGTGCGCCGTTGGAGGGATGGTAGCTTGGAGATGGATTTGCCTATGATGCAATTGAAAGAGCTCTTCAATGTCAATCATTTTATAGTTAGTCAGGCCAATCCTCACATTGCCCCATTATTGAGATTCAAAGAAATTATCCGAGCTTATGGAGGTAATTTTGCAGCAAAGCTTGCTCATCTAGCAGAGATGGAGGTGAAACATAGATGTAATCAAGTACTGGAACTCGGCTTTCCATTAGGTGGACTAGCCAAACTGTTTGCTCAAGACTGGGAGGGTGATGTAACAGTTGTTATGCCTGCAACTCCTGCCCAATACTTAAAAATCATACAGAACCCTTCTTATGTAGAGCTTCAAAAGGCAGCTAACCAAGGCAGAAGATGCACCTGGGAGAAGCTTTCGGCCATGAAAGCAAATTGTGGAATTGAGCTTGCTCTTGATGAGTCTGTTGCAATTCTCAATCATATGAGACGACTCAAAAGAAATGCTGAGAGAACTGCTGCTGCTTCTCATGGTCTTCCCAGTACAGGCAAATTTAGTGGTTCAAGAAGAATTCCATCGTGGAACATCATTGCACGAGAGAATTCTACAGGCTCCCTAGAAGACCTTCATGCTGCTGCTGCTGCTACTTCCTCATTGCATCAAGGTGTTATTAGTCCCAGTGGAGCCACTGGTAAAAATTGGAAGTCCCACCGTAGCTTTCATGATGCAAGTGACAGTGAATCTGAAAGTGCTCATGACTTGAATTCTTGGACCAGATCTGGTGGGCCTTTGATGAGAACTACATCAGCAGATATGTTCATTGACTTTTTCCAGAACATAGAAGTTGATACCGAACTAAATAGAGGCAAGGTGACAAACACTACCACTAGCCCTCGTGATTTTCAGCATCACATTTCAAGGCACACAACACCTGATCATAATAGGTGGTGCTCTAAGAGAACAGAAATCGATCAGAAAGAAAATGGCAACAGGATGATTGCCATGAATGGATCTAACATAATGGTAACTGAAGGTGATCTTTTACAGCCTGAAAGGATCCATAATGGGATTGTGTTTAATGTTGTCAAGAAACAAGACTTTTTGACCCCTTCAAATAGGAATAATGATTATAATAGTTGTTGTAACAATGAAGTTGCTGAATGTGTACAAATTGAATTTCCAGGGAAGGAGGTGGATGCTCTTAGTTCAGCTTCCGAAAATGGCGATGATGGTTCCACAATGGCCAGGTCCCTAACTGAAAAACCAGATTATAATTCAACAAATCATTTCAGCAAAGATTTTGGTGAAGATCAAAGCATTGCTGACAATTAA
>Glyma10g16530.1 sequence type=predicted peptide gene model=Glyma10g16530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDHINNEASVDPFAIGPSSILGRTIAFRVLFCKSISQLRHHIHFVLLDILKRFWGFWGPIVSWLHPRNPQGILAMMTIIAVLLKRYSSVKVRAEIAYRQNFWRNMMRAALTYEEWAHAAKMIDRETPKMNESKDLYDVELVSNKLQELRHRRQEGSLRDIIFCMRADLVRNLGNMCNPELHKGRLQMPRLIKEYIDEVSTQLRMVCNSDSEELALEEKLSFMHETRHAFGRTALLLSGGASLGAFHVGVVKTLVEHKLLPRIIAGSSVGSIMCSIVATRSWPELQSFFEDSLHSLQFFDQMGGIFTVVKRVTTYGAVHEIRQLQMLLRNLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPHVVIWSAVTASCAFPGLFEAQELMAKDRSGEIVPYHPPFNLGPEKGSTSVRRWRDGSLEMDLPMMQLKELFNVNHFIVSQANPHIAPLLRFKEIIRAYGGNFAAKLAHLAEMEVKHRCNQVLELGFPLGGLAKLFAQDWEGDVTVVMPATPAQYLKIIQNPSYVELQKAANQGRRCTWEKLSAMKANCGIELALDESVAILNHMRRLKRNAERTAAASHGLPSTGKFSGSRRIPSWNIIARENSTGSLEDLHAAAAATSSLHQGVISPSGATGKNWKSHRSFHDASDSESESAHDLNSWTRSGGPLMRTTSADMFIDFFQNIEVDTELNRGKVTNTTTSPRDFQHHISRHTTPDHNRWCSKRTEIDQKENGNRMIAMNGSNIMVTEGDLLQPERIHNGIVFNVVKKQDFLTPSNRNNDYNSCCNNEVAECVQIEFPGKEVDALSSASENGDDGSTMARSLTEKPDYNSTNHFSKDFGEDQSIADN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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