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Report for Sequence Feature Glyma10g16530

Feature Type:gene_model
Chromosome:Gm10
Start:19596853
stop:19602445
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g16530
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G04040AT Annotation by Michelle Graham. TAIR10: Patatin-like phospholipase family protein | chr5:1090346-1093003 FORWARD LENGTH=825 SoyBaseE_val: 0ISS
GO:0006629GO-bp Annotation by Michelle Graham. GO Biological Process: lipid metabolic process SoyBaseN/AISS
GO:0006635GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation SoyBaseN/AISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0016558GO-bp Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix SoyBaseN/AISS
GO:0019433GO-bp Annotation by Michelle Graham. GO Biological Process: triglyceride catabolic process SoyBaseN/AISS
GO:0044265GO-bp Annotation by Michelle Graham. GO Biological Process: cellular macromolecule catabolic process SoyBaseN/AISS
GO:0012511GO-cc Annotation by Michelle Graham. GO Cellular Compartment: monolayer-surrounded lipid storage body SoyBaseN/AISS
GO:0004806GO-mf Annotation by Michelle Graham. GO Molecular Function: triglyceride lipase activity SoyBaseN/AISS
GO:0005525GO-mf Annotation by Michelle Graham. GO Molecular Function: GTP binding SoyBaseN/AISS
KOG2214 KOG Predicted esterase of the alpha-beta hydrolase superfamily JGI ISS
PTHR11711Panther ARF-RELATED JGI ISS
PTHR11711:SF1Panther ADP-RIBOSYLATION FACTOR JGI ISS
PF01734PFAM Patatin-like phospholipase JGI ISS
PF11815PFAM Domain of unknown function (DUF3336) JGI ISS
UniRef100_G7IDS5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Patatin-like phospholipase domain-containing protein n=1 Tax=Medicago truncatula RepID=G7IDS5_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233C38BUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233C38B related cluster n=1 Tax=unknown RepID=UPI000233C38B SoyBaseE_val: 0ISS

Expression Patterns of Glyma10g16530
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g16530 not represented in the dataset
Glyma10g16530 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g16530 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g105200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g16530
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g16530
>Glyma10g16530.1   sequence type=CDS   gene model=Glyma10g16530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCATATAAATAACGAGGCTAGTGTTGACCCTTTTGCGATTGGCCCTTCTAGCATTCTTGGTAGAACAATTGCTTTCAGGGTTCTCTTCTGCAAGTCTATCTCACAATTGAGGCATCATATACATTTTGTGTTGTTGGATATCTTGAAAAGATTTTGGGGATTTTGGGGACCCATTGTGTCATGGTTGCATCCAAGAAACCCGCAGGGGATATTGGCAATGATGACAATAATTGCTGTCTTGTTGAAACGTTACAGCAGTGTGAAGGTGAGGGCCGAGATAGCATATAGGCAGAATTTTTGGAGAAATATGATGCGAGCTGCATTGACCTATGAGGAGTGGGCTCATGCAGCCAAGATGATTGATAGAGAGACACCAAAGATGAATGAATCAAAAGACCTTTATGATGTGGAGTTGGTGAGTAACAAGCTTCAAGAGCTTCGCCATCGCAGGCAAGAGGGGTCTCTTAGAGATATAATATTTTGTATGCGTGCAGATCTTGTTAGGAATCTAGGTAATATGTGTAATCCAGAGCTACACAAAGGTAGGCTTCAGATGCCAAGACTAATCAAGGAGTATATTGATGAGGTATCAACTCAATTGAGAATGGTTTGCAACTCTGATTCAGAGGAGCTTGCATTGGAAGAAAAGCTTTCTTTCATGCATGAAACTAGACACGCATTTGGGAGGACTGCTTTGTTGTTAAGTGGAGGTGCTTCCCTTGGAGCTTTTCATGTTGGTGTGGTTAAAACACTGGTTGAACATAAACTTTTGCCTAGGATAATTGCTGGTTCAAGTGTAGGATCCATTATGTGTTCTATTGTTGCCACTAGGTCTTGGCCTGAGCTCCAAAGCTTTTTTGAGGATTCATTGCACTCATTACAGTTTTTTGATCAAATGGGTGGGATTTTTACAGTTGTGAAGAGGGTAACAACATATGGTGCAGTTCATGAGATCAGACAGTTGCAAATGTTGTTGAGGAATCTAACAAGCAATCTTACATTTCAAGAAGCATATGACATGACGGGTCGAATTCTCGGAATTACAGTTTGCTCCCCGAGAAAGCATGAACCACCCAGATGTCTTAACTACTTGACTTCACCTCATGTTGTTATATGGAGCGCAGTCACTGCTTCTTGTGCCTTTCCTGGCCTTTTCGAGGCTCAGGAATTGATGGCAAAGGATAGAAGTGGAGAGATTGTTCCTTACCATCCACCATTTAATTTGGGTCCTGAAAAGGGTTCCACTTCAGTGCGCCGTTGGAGGGATGGTAGCTTGGAGATGGATTTGCCTATGATGCAATTGAAAGAGCTCTTCAATGTCAATCATTTTATAGTTAGTCAGGCCAATCCTCACATTGCCCCATTATTGAGATTCAAAGAAATTATCCGAGCTTATGGAGGTAATTTTGCAGCAAAGCTTGCTCATCTAGCAGAGATGGAGGTGAAACATAGATGTAATCAAGTACTGGAACTCGGCTTTCCATTAGGTGGACTAGCCAAACTGTTTGCTCAAGACTGGGAGGGTGATGTAACAGTTGTTATGCCTGCAACTCCTGCCCAATACTTAAAAATCATACAGAACCCTTCTTATGTAGAGCTTCAAAAGGCAGCTAACCAAGGCAGAAGATGCACCTGGGAGAAGCTTTCGGCCATGAAAGCAAATTGTGGAATTGAGCTTGCTCTTGATGAGTCTGTTGCAATTCTCAATCATATGAGACGACTCAAAAGAAATGCTGAGAGAACTGCTGCTGCTTCTCATGGTCTTCCCAGTACAGGCAAATTTAGTGGTTCAAGAAGAATTCCATCGTGGAACATCATTGCACGAGAGAATTCTACAGGCTCCCTAGAAGACCTTCATGCTGCTGCTGCTGCTACTTCCTCATTGCATCAAGGTGTTATTAGTCCCAGTGGAGCCACTGGTAAAAATTGGAAGTCCCACCGTAGCTTTCATGATGCAAGTGACAGTGAATCTGAAAGTGCTCATGACTTGAATTCTTGGACCAGATCTGGTGGGCCTTTGATGAGAACTACATCAGCAGATATGTTCATTGACTTTTTCCAGAACATAGAAGTTGATACCGAACTAAATAGAGGCAAGGTGACAAACACTACCACTAGCCCTCGTGATTTTCAGCATCACATTTCAAGGCACACAACACCTGATCATAATAGGTGGTGCTCTAAGAGAACAGAAATCGATCAGAAAGAAAATGGCAACAGGATGATTGCCATGAATGGATCTAACATAATGGTAACTGAAGGTGATCTTTTACAGCCTGAAAGGATCCATAATGGGATTGTGTTTAATGTTGTCAAGAAACAAGACTTTTTGACCCCTTCAAATAGGAATAATGATTATAATAGTTGTTGTAACAATGAAGTTGCTGAATGTGTACAAATTGAATTTCCAGGGAAGGAGGTGGATGCTCTTAGTTCAGCTTCCGAAAATGGCGATGATGGTTCCACAATGGCCAGGTCCCTAACTGAAAAACCAGATTATAATTCAACAAATCATTTCAGCAAAGATTTTGGTGAAGATCAAAGCATTGCTGACAATTAA
Predicted protein sequences of Glyma10g16530
>Glyma10g16530.1   sequence type=predicted peptide   gene model=Glyma10g16530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDHINNEASVDPFAIGPSSILGRTIAFRVLFCKSISQLRHHIHFVLLDILKRFWGFWGPIVSWLHPRNPQGILAMMTIIAVLLKRYSSVKVRAEIAYRQNFWRNMMRAALTYEEWAHAAKMIDRETPKMNESKDLYDVELVSNKLQELRHRRQEGSLRDIIFCMRADLVRNLGNMCNPELHKGRLQMPRLIKEYIDEVSTQLRMVCNSDSEELALEEKLSFMHETRHAFGRTALLLSGGASLGAFHVGVVKTLVEHKLLPRIIAGSSVGSIMCSIVATRSWPELQSFFEDSLHSLQFFDQMGGIFTVVKRVTTYGAVHEIRQLQMLLRNLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPHVVIWSAVTASCAFPGLFEAQELMAKDRSGEIVPYHPPFNLGPEKGSTSVRRWRDGSLEMDLPMMQLKELFNVNHFIVSQANPHIAPLLRFKEIIRAYGGNFAAKLAHLAEMEVKHRCNQVLELGFPLGGLAKLFAQDWEGDVTVVMPATPAQYLKIIQNPSYVELQKAANQGRRCTWEKLSAMKANCGIELALDESVAILNHMRRLKRNAERTAAASHGLPSTGKFSGSRRIPSWNIIARENSTGSLEDLHAAAAATSSLHQGVISPSGATGKNWKSHRSFHDASDSESESAHDLNSWTRSGGPLMRTTSADMFIDFFQNIEVDTELNRGKVTNTTTSPRDFQHHISRHTTPDHNRWCSKRTEIDQKENGNRMIAMNGSNIMVTEGDLLQPERIHNGIVFNVVKKQDFLTPSNRNNDYNSCCNNEVAECVQIEFPGKEVDALSSASENGDDGSTMARSLTEKPDYNSTNHFSKDFGEDQSIADN*






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