Report for Sequence Feature Glyma10g16420
Feature Type: gene_model
Chromosome: Gm10
Start: 19501374
stop: 19513147
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma10g16420
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G57190 AT
Annotation by Michelle Graham. TAIR10: peptide chain release factor, putative | chr3:21166468-21168198 FORWARD LENGTH=406
SoyBase E_val: 4.00E-146 ISS
GO:0006415 GO-bp
Annotation by Michelle Graham. GO Biological Process: translational termination
SoyBase N/A ISS
GO:0009658 GO-bp
Annotation by Michelle Graham. GO Biological Process: chloroplast organization
SoyBase N/A ISS
GO:0009772 GO-bp
Annotation by Michelle Graham. GO Biological Process: photosynthetic electron transport in photosystem II
SoyBase N/A ISS
GO:0010190 GO-bp
Annotation by Michelle Graham. GO Biological Process: cytochrome b6f complex assembly
SoyBase N/A ISS
GO:0016556 GO-bp
Annotation by Michelle Graham. GO Biological Process: mRNA modification
SoyBase N/A ISS
GO:0043488 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of mRNA stability
SoyBase N/A ISS
GO:0048255 GO-bp
Annotation by Michelle Graham. GO Biological Process: mRNA stabilization
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0009570 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma
SoyBase N/A ISS
GO:0003730 GO-mf
Annotation by Michelle Graham. GO Molecular Function: mRNA 3'-UTR binding
SoyBase N/A ISS
GO:0003747 GO-mf
Annotation by Michelle Graham. GO Molecular Function: translation release factor activity
SoyBase N/A ISS
GO:0016149 GO-mf
Annotation by Michelle Graham. GO Molecular Function: translation release factor activity, codon specific
SoyBase N/A ISS
GO:0043565 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding
SoyBase N/A ISS
KOG2726
KOG
Mitochondrial polypeptide chain release factor
JGI ISS
PTHR11075 Panther
PEPTIDE CHAIN RELEASE FACTOR
JGI ISS
PTHR11075:SF4 Panther
gb def: protein releasing factor [caenorhabditis elegans]
JGI ISS
PF00472 PFAM
RF-1 domain
JGI ISS
PF03462 PFAM
PCRF domain
JGI ISS
UniRef100_G7I3P7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Peptide chain release factor n=1 Tax=Medicago truncatula RepID=G7I3P7_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1LA53 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LA53_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma10g16420
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma10g16420
Paralog Evidence Comments
Glyma02g34766 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma10g16420 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.10g105300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma10g16420
Coding sequences of Glyma10g16420
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g16420.1 sequence type=CDS gene model=Glyma10g16420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTTATGGCAACTGTGGGATCTGAACCTGCTTGTGCAAGAACGGTTCATGATGTTGCATCTTCTTTCAGCTCTAAATGGCAGCACTCTTCTACGGTTAAGAAGCAGCCACGTGCTCGAATTCCTCAATGTTCTCTCAGGATTAGAGCTTGTAGTTCCATGGCTAACAAAAAGGACATCTACAACCAAGTGGGTTTATTTTCTCTAAAAAGGAAAATTGAAGATGCAGTTCTTCGTGCTGAAATGTTTGCATCGACAGCCTTGGAAATGGAAGAAGCAACGTGGATTAAGCAGGAAGAAATGGTACGTGATTTTGATATGTGGGATGATCCAGCTAAGTCCAATGACATCCTTGTCAAGTTGGCAAACAGTGCCAAAGTGGTTGATTCTCTAAAGGACTTGAAATACAAGGTAGAGGAAGCAAAGCTGATCAATCAGTTGGCTGAGATAAATGCTATTGATTATGGGCTTTATAAACAAGCATATGAAACATCATTGGATGTCAGCGAGATTGTGGATCTGTACGAGATTTCTAAGCTTCTTAAAGGGCCTTTTGATATGGCAGGAGCATGTTTGGTTATAAAAGCTGGACCTAAGGGCATGTATCCAAAGCTCTGGGCAGAACAGATCCTAAGCATGTATCTTAGATGGGCCAAAAGACAAGGTTATGAAGGAAGGATTGTTGACAAGTGTCTGTACAAGAATGGAGGAATTAATTCTGCGATTATAGAGTTTGAATTTGAGTGTGCATATGGCTATCTTTCAGGGGAAAAAGGAGTTCACTATTTGATAAGAGGTTCTCCAAATGAATCTTCTCAGCTTGAGGCTAGCTCAGCAACTGTAGATGTTATTCCCATGTTTCTTGAGAGTGCTTGTGATCTTGAAATTGATTCTGAGGATTTGATTATCTCATCTCCCTTGATTCATGGGAAAAACAAGAGACAAACTGATCATACAGTTTGCATTCAACATATACCTACTGGCATAAGTGTCCAATCCTATGGTGAGAGAAGCCACTTTGCAAATAAGATGAAAGCACTAAACAGACTGAAAGCTAAACTTTTAGTGACAACAAAGGAACAAGGAGTTGCAAGTATAAAAAGTATACAGAAGGAAAACATTGTCAATTTATGGCAAGAAGAAATTCGGAGGTATGTCTCTCATCCGCACAAGTTAGTACATGATGTAAAGACAGGCGTTGAGGTGCCAGACCTAAATTATGTTCTGGAGGGGAATATTGGACCCCTTATTGCAGCTCATATTAATAGCAGAGTCATGTCATAA
Predicted protein sequences of Glyma10g16420
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma10g16420.1 sequence type=predicted peptide gene model=Glyma10g16420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVMATVGSEPACARTVHDVASSFSSKWQHSSTVKKQPRARIPQCSLRIRACSSMANKKDIYNQVGLFSLKRKIEDAVLRAEMFASTALEMEEATWIKQEEMVRDFDMWDDPAKSNDILVKLANSAKVVDSLKDLKYKVEEAKLINQLAEINAIDYGLYKQAYETSLDVSEIVDLYEISKLLKGPFDMAGACLVIKAGPKGMYPKLWAEQILSMYLRWAKRQGYEGRIVDKCLYKNGGINSAIIEFEFECAYGYLSGEKGVHYLIRGSPNESSQLEASSATVDVIPMFLESACDLEIDSEDLIISSPLIHGKNKRQTDHTVCIQHIPTGISVQSYGERSHFANKMKALNRLKAKLLVTTKEQGVASIKSIQKENIVNLWQEEIRRYVSHPHKLVHDVKTGVEVPDLNYVLEGNIGPLIAAHINSRVMS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
