Report for Sequence Feature Glyma10g16410
Feature Type: gene_model
Chromosome: Gm10
Start: 19478237
stop: 19490357
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma10g16410
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G10160 AT
Annotation by Michelle Graham. TAIR10: DHFS-FPGS homolog C | chr3:3139588-3143949 REVERSE LENGTH=625
SoyBase E_val: 0 ISS
GO:0006730 GO-bp
Annotation by Michelle Graham. GO Biological Process: one-carbon metabolic process
SoyBase N/A ISS
GO:0009853 GO-bp
Annotation by Michelle Graham. GO Biological Process: photorespiration
SoyBase N/A ISS
GO:0090351 GO-bp
Annotation by Michelle Graham. GO Biological Process: seedling development
SoyBase N/A ISS
GO:0005759 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial matrix
SoyBase N/A ISS
GO:0004326 GO-mf
Annotation by Michelle Graham. GO Molecular Function: tetrahydrofolylpolyglutamate synthase activity
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
GO:0016874 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ligase activity
SoyBase N/A ISS
KOG2525
KOG
Folylpolyglutamate synthase
JGI ISS
PTHR11136 Panther
FOLYLPOLYGLUTAMATE SYNTHASE-RELATED
JGI ISS
PF08245 PFAM
Mur ligase middle domain
JGI ISS
UniRef100_I1LA52 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Folylpolyglutamate synthase n=1 Tax=Glycine max RepID=I1LA52_SOYBN
SoyBase E_val: 0 ISS
UniRef100_UPI000233C389 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233C389 related cluster n=1 Tax=unknown RepID=UPI000233C389
SoyBase E_val: 0 ISS
Expression Patterns of Glyma10g16410
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma10g16410
Paralog Evidence Comments
Glyma02g34760 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma10g16410 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.10g105400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma10g16410
Coding sequences of Glyma10g16410
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g16410.2 sequence type=CDS gene model=Glyma10g16410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTAGGAGTATCACATTTCACTTGGTGGCATATGAAATCCACCATCAAGACAAAATGGGCTTATTCTTGTTTACCTGCATTTACATGCATACATAATTTCACAGGACAAAGATTTATATATAAGACATCATCTGAAGTTCATTTTGAAAGGGAAAGCAATTCTGTCACCAATGGACAATTGCAAAATTTCCCAACATCTTCATACGAAACTGCCATGGAAAAAATTTCATCTCTTATTACTTGCCAAAGGCGTGGGGAAAAGCCACCGATTGCCAACAAATTAGAAGTAATGTCACTGTATCTTAAGATATTGGGTTTGGAAGAAGATATAAACAGGCTTAACATTATTCATGTGGCAGGCACAAAGGGGAAGGGTTCAACGTGCATATTCTGTGAGGCAATCTTAAGGGAGTGTGGCTTTCGCACCGGAGTTTTCACATCCCCTCACCTAATCGATGTGCGTGAAAGATTTCGTATAGATGGGATTGACATATCTGAAGGCAAGTTTTTGCAATATTTCTGGGATTGTTGGAATCGATTGGAGGAAAATACAACAGAGCAGCTTTCAATGCCACCGCTATTTCTGTTTCTTACTATTTTGGCCTTCAAAATATTTATATCTGAACAGGTTGATGCTGCCATTATAGAAGTTGGTCTTGGAGGTAAAGAAGACTCAACTAATGTGATTAAAGAACCTACAGTTTGCGGCATTACTTCTCTGGGCATGGATCATACTGAGATATTAGGAGATACTATTGGACAGATAGCTTCACACAAGGCAGGGATTTTTAAGCCTAAGGTACCTGCCTTCACTGTACCCCAACCTCCTGAAGCAATGGATGTTATCCTTGAGAGGGCCAAAGAACTCATGGTTCCACTGGAAGTGACTGAACCTTTTGATTGTAAACAAATTAAGGGATTAGAGCTTGGCTTATCGGGTGATCACCAATTCTATAATGCTGCTCTTGCAGTCTCTCTTTCTAGATGTTGGCTTCAGAGAACAGGGAACTGGGGAGAAAAATATCAAAACGATTCTAATTTGCCACATGAATTTATTAGAGGCCTTTCAACAGCATATTTTTCTGGAAGAGCTCAGATTGTTTACGACTCTTATCCAAATTCTGACGGCTCAGAAATCTTTTCTAAAAATTATGGTGGAGAGTTGATATTTTATTTGGATGGAGCTCATAGTCCAGAGAGCATGGAGGCTTGCGCAAAGTGGTTCTCTAATGCCGTAAGAAGATATGAAATTCTGCCACATTTGTCTTTCAAAGTAGAAAATGCAGAGGAATCTTCAGAAAATGGCCACCTCCTACATGAAAGCAAGACCTTGGGGCAGTTTGAGAAATCTTTTAGGCAGATTCTTCTATTCAATTGCTTAGATGTGAGAAATCCCCATGTTTTGCTTCCGCAGCTGGTGAATACATGTGCTTCTTCAGGTATTCATTTCTCGAGAGCACTTTTTGTCCCAAATATGTCAAAGTATAGTAAGGTTACTTCTGGTGCATCAGTTATTTCTTCTGATCTCAATGGCATAGACCTATCATGGCAATTTAACCTCCAAAGAATCTGGGAGAAGATTACACATGGGAAAGAAATGATCACTTCGCTTGAAAAGGATTTCAAGATAGACAGCAAGGAGATCTTACCACCTCATGAATTTCTTTACGATGATGCTTCAACTGGCTGCCATTCTCATAACTATCTGGCACACAGTGCAGTAATACCTTCATTGCCATTGACAATAAAATGGCTGCGGGACTGCGTCAGAGAACACCCTTCCACAAGACTTCAGGTTCTTGTGACTGGATCACTGCATCTTGTTGGAGATGTATTAAAGCTCTTGAAAAGATGA
Predicted protein sequences of Glyma10g16410
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma10g16410.2 sequence type=predicted peptide gene model=Glyma10g16410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVGVSHFTWWHMKSTIKTKWAYSCLPAFTCIHNFTGQRFIYKTSSEVHFERESNSVTNGQLQNFPTSSYETAMEKISSLITCQRRGEKPPIANKLEVMSLYLKILGLEEDINRLNIIHVAGTKGKGSTCIFCEAILRECGFRTGVFTSPHLIDVRERFRIDGIDISEGKFLQYFWDCWNRLEENTTEQLSMPPLFLFLTILAFKIFISEQVDAAIIEVGLGGKEDSTNVIKEPTVCGITSLGMDHTEILGDTIGQIASHKAGIFKPKVPAFTVPQPPEAMDVILERAKELMVPLEVTEPFDCKQIKGLELGLSGDHQFYNAALAVSLSRCWLQRTGNWGEKYQNDSNLPHEFIRGLSTAYFSGRAQIVYDSYPNSDGSEIFSKNYGGELIFYLDGAHSPESMEACAKWFSNAVRRYEILPHLSFKVENAEESSENGHLLHESKTLGQFEKSFRQILLFNCLDVRNPHVLLPQLVNTCASSGIHFSRALFVPNMSKYSKVTSGASVISSDLNGIDLSWQFNLQRIWEKITHGKEMITSLEKDFKIDSKEILPPHEFLYDDASTGCHSHNYLAHSAVIPSLPLTIKWLRDCVREHPSTRLQVLVTGSLHLVGDVLKLLKR*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
