Glyma10g16386 - SoyBase

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Report for Sequence Feature Glyma10g16386

Feature Type:	gene_model
Chromosome:	Gm10
Start:	19396045
stop:	19397572
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g16386

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PF02721	PFAM	Domain of unknown function DUF223	JGI		ISS
UniRef100_G7JLV9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Replication factor-a protein 1 (Rpa1) family protein n=1 Tax=Medicago truncatula RepID=G7JLV9_MEDTR	SoyBase	E_val: 8.00E-25	ISS
UniRef100_UPI000233D612	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D612 related cluster n=1 Tax=unknown RepID=UPI000233D612	SoyBase	E_val: 8.00E-82	ISS

Expression Patterns of Glyma10g16386

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g16386 not represented in the dataset	Glyma10g16386 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g16386 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g105700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g16386

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g16386

Limit To All Plant Sequences

>Glyma10g16386.1   sequence type=CDS   gene model=Glyma10g16386   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACGTTCTCTAGACAAGATAAAGAACATCGATGGCTCAAAGGAAACTCTTAAACTTACTGTGAGGATCACTGATCTATGGTTTATTGGGACACCTAACAAATCTGAGCAAGCTGGGATGGTTTTTGTGGACTCTGATGGTGATGAGATCCATGTTGTTTGTAAACAAGACCAATTGAAGTCTTGGAAGATGGACTTCAAGGAAAATTGTACTTATGTCATGCACAATTGTAAAGTGCTAAAAAACAACGATCAGTACAGAGTTTGTGATCACCAATTTAAATTGGTGTTTATTGGGGTTACTGTTGTAAGGCAGTGTGTTCAAGAGGACCTCCCTTTTAGAAAATATAGGTTTGCTGGATTTGCGGATGTTGTGGCTAGCCAGTTTGAACCTGGGCTATTGGTTGGTATGTTAACTTATATTTTTGCAATTGACCAGCAATTGCTATCTTGCACTTTGTGGGACGATTATTGCTTGCAGTTTTTAAAGTTCTTAGATGATCATGAAGGTCATGGCCCAATTACAGTTCTATTGACCCATGATAGAATAAAGGAAGCTCAGGGTATATCCTTATCTTTAATTTATTGGCCCGGTCAGTTTTTAAATCCCATGGTAAAGGCAGTTCACAACTTTCAGGAAATTGTTTGTGTAACTGTTGGCACAATTACTAGGATTGTTATGGACAATCATTCATGGTGTTATACAACTTGCATTCAGTGCCATAAAAAAAGTGATGTAGAGATGGCGCCCTTCACATGTGCATGCGGCAAATACTGA

Predicted protein sequences of Glyma10g16386

Limit To All Plant Sequences

>Glyma10g16386.1   sequence type=predicted peptide   gene model=Glyma10g16386   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARSLDKIKNIDGSKETLKLTVRITDLWFIGTPNKSEQAGMVFVDSDGDEIHVVCKQDQLKSWKMDFKENCTYVMHNCKVLKNNDQYRVCDHQFKLVFIGVTVVRQCVQEDLPFRKYRFAGFADVVASQFEPGLLVGMLTYIFAIDQQLLSCTLWDDYCLQFLKFLDDHEGHGPITVLLTHDRIKEAQGISLSLIYWPGQFLNPMVKAVHNFQEIVCVTVGTITRIVMDNHSWCYTTCIQCHKKSDVEMAPFTCACGKY*

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