|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT2G41460 | AT | Annotation by Michelle Graham. TAIR10: apurinic endonuclease-redox protein | chr2:17285731-17288769 FORWARD LENGTH=536 | SoyBase | E_val: 3.00E-70 | ISS |
GO:0000085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle | SoyBase | N/A | ISS |
GO:0006281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA repair | SoyBase | N/A | ISS |
GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
GO:0008284 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation | SoyBase | N/A | ISS |
GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
GO:0016571 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone methylation | SoyBase | N/A | ISS |
GO:0016579 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein deubiquitination | SoyBase | N/A | ISS |
GO:0043687 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-translational protein modification | SoyBase | N/A | ISS |
GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
GO:0048573 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering | SoyBase | N/A | ISS |
GO:0051276 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromosome organization | SoyBase | N/A | ISS |
GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
GO:0042644 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast nucleoid | SoyBase | N/A | ISS |
GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
GO:0003906 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA-(apurinic or apyrimidinic site) lyase activity | SoyBase | N/A | ISS |
GO:0004518 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nuclease activity | SoyBase | N/A | ISS |
GO:0004519 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: endonuclease activity | SoyBase | N/A | ISS |
PTHR22748 | Panther | AP ENDONUCLEASE | JGI | ISS | |
PF03372 | PFAM | Endonuclease/Exonuclease/phosphatase family | JGI | ISS | |
UniRef100_B9SVS9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ap endonuclease, putative n=1 Tax=Ricinus communis RepID=B9SVS9_RICCO | SoyBase | E_val: 4.00E-71 | ISS |
UniRef100_I1LA50 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1LA50_SOYBN | SoyBase | E_val: 5.00E-145 | ISS |
Glyma10g16340 not represented in the dataset |
Glyma10g16340 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g16340.1 sequence type=CDS gene model=Glyma10g16340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCCTATTCGAAGCTATTTCCATACGATCCATATCAGCCACGCCCTCCCCCTTCTTCTTGTGATTGTCTTTATTTTGGTCCTGGCTCGCCTTTCCTCTCCCAAACTCCTTTGAAGCGTACAAATCCTTACCTTCTCCCTTCTTTGTTTCTCCTTTTGACCTCGCAGCTCCAGTGCAATTACCTTATCAAGCCACTTTCAGTTCGATATGGCCTAGGTATATCAGATCATGATAGTGAGGGTAGACTTGTAACGGCTGAGTTTGATACATTTTATTTGATATGTGGATATTCTTACAGGGTGACTGAATGGGATCCATCTCTCAGCAATTATTTGAAAGAGCTGGAGAAGTCAAAACCTGTAATTTTGACTGGTGATCTAAATTGTGCTCATGAAGAGATAGATATATACAACCCGGCTGGCAACAAGAGAAGTGCCGGGCTTACAGATGAAGAGAGGAAATCATTTGCAACGAACTTTTTATCTAGGGGATTTGTAGATACCTTTAGAAGGCAGCATCCTGGTGTTATTGGATATACTTATTGGGGTTACCGGCATGGTGGACGCAAGTTTAACAGAGAATCTAGTGGTATTATATGTAGATATTAA
>Glyma10g16340.1 sequence type=predicted peptide gene model=Glyma10g16340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high SYSKLFPYDPYQPRPPPSSCDCLYFGPGSPFLSQTPLKRTNPYLLPSLFLLLTSQLQCNYLIKPLSVRYGLGISDHDSEGRLVTAEFDTFYLICGYSYRVTEWDPSLSNYLKELEKSKPVILTGDLNCAHEEIDIYNPAGNKRSAGLTDEERKSFATNFLSRGFVDTFRRQHPGVIGYTYWGYRHGGRKFNRESSGIICRY*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||