SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G10300 | AT | Annotation by Michelle Graham. TAIR10: Calcium-binding EF-hand family protein | chr3:3186436-3188071 FORWARD LENGTH=335 | SoyBase | E_val: 1.00E-123 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0010286 | GO-bp | Annotation by Michelle Graham. GO Biological Process: heat acclimation | SoyBase | N/A | ISS |
| GO:0030048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin filament-based movement | SoyBase | N/A | ISS |
| GO:0051645 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi localization | SoyBase | N/A | ISS |
| GO:0051646 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mitochondrion localization | SoyBase | N/A | ISS |
| GO:0060151 | GO-bp | Annotation by Michelle Graham. GO Biological Process: peroxisome localization | SoyBase | N/A | ISS |
| GO:0005509 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calcium ion binding | SoyBase | N/A | ISS |
| KOG0037 | KOG | Ca2+-binding protein, EF-Hand protein superfamily | JGI | ISS | |
| PTHR10183 | Panther | CALPAIN | JGI | ISS | |
| PTHR10183:SF16 | Panther | CALPAIN-RELATED | JGI | ISS | |
| PF00036 | PFAM | EF hand | JGI | ISS | |
| UniRef100_E2JF17 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: EF-hand calcium-binding protein n=1 Tax=Vitis vinifera RepID=E2JF17_VITVI | SoyBase | E_val: 6.00E-138 | ISS |
| UniRef100_I1LA46 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LA46_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma10g16040 not represented in the dataset |
Glyma10g16040 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g106400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g16040.1 sequence type=CDS gene model=Glyma10g16040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCGGCTATCCCAACCAGCCTCCCAGCTACAGCTACGGCGCGCCGCCGCCGCCCCAACCCTACGGTGCCCATCCGCCATCGCAATCATACGGGGCTCCTCCGCCATCGCAATCATACGGGGCTCCTCCGCCACCGCAACCCTACGGCGCGCCGCCGCCCGCTCAGCCCTACTCCGCCTCCCCCTACGCCCAACCGTCCGCCCCCTACGCCGCCCCCTACAACAAACCCCCGAAGAACGAGTCCCACTCCCACGGCGGAGGAAGCAGCGGCGGCTACCCGGCTCCGGCGTACGCGAGCCCGTTCGCGTCGCTGGTGCCATCGGCGTTCCCTCCAGGGACAGACCCTAACGTGGTGGCGTGCTTCCAGATGGCGGACCAGGACGGAAGCGGATTTATCGACGACAAGGAAATGCAGGGAGCGCTTTCTTCCTATAACCAAAGCTTCAGCCTCAGAACCGTTCATCTTCTCATGTATCACTTCACCAATTCCAACGTCAAGAAAATAGGACCAAAGGAATTCACTTCTCTATTTTACAGTCTTCAGAACTGGAGGTCCATTTTTGAGAGATTTGATAAAGACAGAAGCGGCAAAATCGATTCTACTGAGTTGAGAGATGCTCTACTGAGTCTGGGCTATGCTGTTTCTCCTGTGGTATTGGATTTGCTCGTCTCAAAGTTTGACAAAACTGGTGGAAAAAGCAAGGCTATAGAATATGACAATTTCATCGAGTGTTGTCTTACTGTTAAGGGACTGACTGACAAATTCAAAGAAAAGGATACTGCGTATTCTGGCTCTGCAACCTTCACCTATGAATCGTTTATGCTGACAGTCCTGCCATTCCTAATAGCTTAG
>Glyma10g16040.1 sequence type=predicted peptide gene model=Glyma10g16040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSGYPNQPPSYSYGAPPPPQPYGAHPPSQSYGAPPPSQSYGAPPPPQPYGAPPPAQPYSASPYAQPSAPYAAPYNKPPKNESHSHGGGSSGGYPAPAYASPFASLVPSAFPPGTDPNVVACFQMADQDGSGFIDDKEMQGALSSYNQSFSLRTVHLLMYHFTNSNVKKIGPKEFTSLFYSLQNWRSIFERFDKDRSGKIDSTELRDALLSLGYAVSPVVLDLLVSKFDKTGGKSKAIEYDNFIECCLTVKGLTDKFKEKDTAYSGSATFTYESFMLTVLPFLIA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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