SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G57300 | AT | Annotation by Michelle Graham. TAIR10: INO80 ortholog | chr3:21199612-21207635 FORWARD LENGTH=1507 | SoyBase | E_val: 0 | ISS |
| GO:0000956 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process | SoyBase | N/A | ISS |
| GO:0006306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA methylation | SoyBase | N/A | ISS |
| GO:0006342 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing | SoyBase | N/A | ISS |
| GO:0006346 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0007267 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell-cell signaling | SoyBase | N/A | ISS |
| GO:0009616 | GO-bp | Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing | SoyBase | N/A | ISS |
| GO:0009630 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gravitropism | SoyBase | N/A | ISS |
| GO:0010048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vernalization response | SoyBase | N/A | ISS |
| GO:0010267 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference | SoyBase | N/A | ISS |
| GO:0016246 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA interference | SoyBase | N/A | ISS |
| GO:0016444 | GO-bp | Annotation by Michelle Graham. GO Biological Process: somatic cell DNA recombination | SoyBase | N/A | ISS |
| GO:0035196 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA | SoyBase | N/A | ISS |
| GO:0045739 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of DNA repair | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0004386 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: helicase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016817 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on acid anhydrides | SoyBase | N/A | ISS |
| KOG0388 | KOG | SNF2 family DNA-dependent ATPase | JGI | ISS | |
| PTHR10799 | Panther | ATP-DEPENDENT HELICASE SMARCA (SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN A)-RELATED | JGI | ISS | |
| PTHR10799:SF213 | Panther | DNA HELICASE INO80-RELATED | JGI | ISS | |
| PF00176 | PFAM | SNF2 family N-terminal domain | JGI | ISS | |
| PF00271 | PFAM | Helicase conserved C-terminal domain | JGI | ISS | |
| UniRef100_G7KSM2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Chromatin remodeling complex subunit n=1 Tax=Medicago truncatula RepID=G7KSM2_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233C233 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C233 related cluster n=1 Tax=unknown RepID=UPI000233C233 | SoyBase | E_val: 0 | ISS |
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Glyma10g15990 not represented in the dataset |
Glyma10g15990 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g106500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g15990.1 sequence type=CDS gene model=Glyma10g15990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATCGCAAATCCAAACGCAACCACTCGTTCTCCTACTCCACTCTCTTCAACCTCGAGCCTTTGAAGAACTTTAAACTTCCACGTGAAGATGATGATGATTTTGATTATTATGGGAATAATAGTCAGGAAGATGAGAGCAGAGATAGCCAAGGTGAAAGGGAAAATTACTGTAATGGAAATGTGCACGCAAGGGAGCAGAATTCGTCGAGTAAGAGGGTGTGGTCTGAGAACAGTGATACTGATGATGAGAATAAGGGAAGATATTATGGGACACACATGACACAGGAACGATATCAATCAATGCTTGGAGACCATGTTCAGAAATACAAAAGGAGGCGTAAGGATGCCATGTCTAACACTGATCAAAATCAGGTTGTTGTTCCTCTTGTCAAAAGTAACAATGGCTTAAAAATTCAAAAGTCAGGGAATGATTGTAGGGGAGCATCACATGCTGAAGAAAGGGCATCGGAATGGCTTCAGGATCAGAAACAAGGAAACTTCAGTCGTGCAGATTTCAAGCAGCAATATGGCACTGATAGGATTATGTATGAACCTGCTGTTTTGGACATTGGGAATGGTATCTCTTATGAGATTCCTCCAATTTACGATAAGTTGGCCCCGATGCTGAACCTTCCAAACTTCCTGGATATCCATGTCGATGAATTTTACTTAAAGAGTACCTTGGATTTGGGGTCCTTGGCTGCAATGAGGGCTGCTGATAAAAGGTTTGGGACTAGAAACCAAGCAGGAATGGGGGAACCCCTATCCCAATATGAATCACTTCAGGCAAGAATAAAGGCCATGCCAGCTTCTAATTCACCTCATAAATTCAGCTTGAAAGTGTCTGATGTTGGATTGAATTTATCCATTCCGGAGGGTGCTGCTGGAACCATAAAGCGATCTATTTTATCTGAGGGTGGTGTATTGCAGGTTTATTATGTTAAGGTTTTGGAAAAGGGTGACACATATGAGATAATTGAGCGAAGCCTACCGAAGAAGCAAAAGGTAAGGAAAGATTCTGCTTTGATAGAGAAGGAAGAAATGGATAGAATTGGGAAGATTTGGATAAACATTGTAAGAAGAGACATAGCAAAGCATCATAGGAATTTCACTAATTTTCATCGAAAGCAACTCATTGATGCCAAGAGGTTCTCAGACTACTGTCAAAGAGAGGTTAAAATGAAAGTTAGTAGATCACTCAAATGGATTAAGGGTGCTAACATTCGCACCCGGAAACTAGCTAGAGACATGTTGCTGCTCTGGAAACGAGTAGATAAAGAGATGGCCGAAGTCAGGAAAAGAGAGGAGAAAGAAGCTGCTGAAGCTTTGAGGCGTGAACAAGAGCTTCGAGAAGCTAAGAGGCAGCAGCAAAGGCTTAATTTTCTCATACAACAAACTGAGCTGTACAGCCACTTTATGCAGAACAAGTCAAGTGTACACTCTTCAGATGCTTTACCCTCGGTAGATGAAAACACAAATGATCAAGATGTACTGTTTGACTCTTCAGACGCTGGGCATAATGAGGAGGAAGATCCGGAAGAGGCTGAATTAAAGAAGGAAGCTTTGAAGGCTGCTCAAGAAGCAGTCTCTAAACAGAGAATGTTGACTAATGCTTTTGACAGTGCATGCTTGAGGTTCCGCCAGGTGGATGAAGCCGATTCACTTACACGGCAATTAGCAGGAGGAAGTAACATTGATTTGCAAACCCCATCAACCATGCCAGTGGTATCCACAGTTCAGACACCAGAATTATTTAAAGGTTGTCTAAAAGAATATCAGCTGAAAGGTCTTCAGTGGCTAGTTAATTGTTATGAGCAGGGTTTAAATGGCATACTTGCTGATGAGATGGGACTTGGAAAGACCATACAGGCTATGGCATTTTTAGCCCATTTGGCTGAGGAGAAAAACATATGGGGACCTTTTCTGGTTGTTGCACCTGCTTCTGTATTGAATAATTGGAATGAGGAACTTGAACGCTTCTGCCCTGAGATTAAAAGACTTCCATATTGGGGAGGACTTTCAGAGCGAGCAGTGCTTAGGAAAAGTATTAACCCAAAGGATCTTTATCGTAGGGAGGCTAAATTCCACATTCTTATCACAAGCTATCAGCTATTAGTAACTGATGAGAAGTATTTTCGCCGTGTGAAATGGCAGTACATGGTTTTAGATGAAGCCCAGGCAATCAAAAGTTCAAACAGTATAAGGTGGAAGACACTTCTCAGCTTTAATTGTCGGAATCGCCTACTGCTGACTGGTACACCTGTTCAGAATAATATGGCAGAGTTGTGGGCTCTTCTGCACTTTATCATGCCAACTTTATTTGACAGCCATGAGCAGTTTAATGAGTGGTTCTCGAAAGGAATTGAGAACCATGCAGAACATGGGGGTACGTTGAATGAGCACCAGCTTAATAGATTGCATTCAATACTAAAACCTTTCATGCTGCGACGTGTTAAAAAGGATGTAATTTCTGAGCTGACTAATAAAACTGAGGTTATGGTGCATTGCAAGTTGAGTTCTCGGCAGCAAGCTTTCTATCAAGCTATTAAGAACAAGATATCTCTTGCTGGGTTGTTTGATAGTAATCGTGGGCAGCTCAATGACAAGAAAGTTATGAGTTTAATGAATATTGTTATTCAACTAAGGAAGGTTTGCAACCATCCAGAGTTGTTTGAAAGGAACGAAGGGAGCACGTACTTTTACTTTGGAGAAATTCCAAATTCCCTTCCACCTCCTCCATTCGGGGAGTTAGAGAATATATACTATCCTGGTGGGCATAACCCGATATCATATGAGATACCAAAACTTGTCTATAAAGAGATTATACAAAGTTCGGCTGTTGGTCATGGTATCTGCAGGGAATCTTTTCAGAAATATTTTAATATTTTTAGACCTGAAAATGTTCATCGATCTATCTTCTCAGAAGATATTATTGTTAAAAGTGGAAACTTTGGTTTTACCCATCTGATGGATTTGTCTCCCCAAGAGGTGGCATTTATGGCCACTGGTTCTTTTATGGAGCGACTGTTATTTTCAATGATGAGATGGGAACGGAAGTTCCTTGATGAAGTTTTAGACTTTCTTATAGAGACCACAATCGGTGATCCTGAATGTTACCTTGAGAAAGGTAAAGTGAGAGCTGTTTCACGAATGTTATTGTTGCCATCAAGATATGAGACCAAGTTTCTTCAGAAAAAGTTTGCAACTGGACCCACCAATGCTCCTTTTGAGGCCTTGATGGTCTCACATCAGGATAGGCTTTCATCAAATGCAAGGCTTCTTCACTCAGCATACACATATATCCCACCAACTAGAGCTCCCCCAATTTGTGCTCACTGCTCAGACAGAAACTTCTCCTATAAAATGATTGAAGAATTACATGATCCTTGGGTTAAGAGGTTGTTTGTGGGATTTGCGCGTACATCTGAATGTAATGGGCCTAGAAAGCCTGATAATCCTTCTCATTTAATTGAAGAGATCGATTCTGAATTACCCATTTCACAGCCTGCACTTCAGTTCACGTATGGTATTTTTGGCTCTTCACCGCCTGTGCGGAATTTTGATCCAGCAAAGTTGCTCACTGACTCTAAGAAGCTTCAAACACTGGATATATTATTGAAGCGCTTACGAGCAGAAAATCATCGTGTTCTCTTATTTGCTCAGATGACTAAGATGCTGAATATTTTGGAGGACTATATGAACTATAGAAAATATAGATATTTTAGACTTGATGGGTCATCCACTATTCAGGATCGCAGAGACATGGTTAGAGACTTCCAGCACAGGAGTGATATTTTTGTGTTCTTACTGAGTACAAGAGCTGGTGGATTGGGTATCAACTTGACAGCTGCTGACACAGTCATATTTTACGAGAGTGATTGGAATCCAACATTGGATCTACAGGCGATGGATAGAGCTCATCGTTTGGGTCAGACAAAAGATGTTACTGTTTACCGTCTTATATGTAAAGAGACAGTTGAAGAGAAGATTCTTCATAGAGCAAGTCAGAAAAGTACTGTACAGAACCTTGTCATGACTGGTGGTTCTGTTGGTGGTGATCTTTTAGCTCCCGAGGATGTTGTATCTTTGCTTCTTGATGATGTTCAATTGCAACAGAAGTTAAAGGAAATTCCTCTCCAGGTAAAGAGTAAGCAAAAGAAAAAACCTAACAAGGCTATACGGATAAATGAGGAAGGTGATGCATCTTTGGAGGATCTAACAAACTGTCTAGACCAGGGAACTGCAAATCATGATACTTCCATGGATCCGGAGGGACCAAAGTCCAGTAATAAAAAGACAAAAACAGCTTCTGACAAGCAAAAACCGAGCCCAAAGTGTTCTCAGAAGAAGATGAAAGGCAGTATGTCTAATAGATAA
>Glyma10g15990.1 sequence type=predicted peptide gene model=Glyma10g15990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDRKSKRNHSFSYSTLFNLEPLKNFKLPREDDDDFDYYGNNSQEDESRDSQGERENYCNGNVHAREQNSSSKRVWSENSDTDDENKGRYYGTHMTQERYQSMLGDHVQKYKRRRKDAMSNTDQNQVVVPLVKSNNGLKIQKSGNDCRGASHAEERASEWLQDQKQGNFSRADFKQQYGTDRIMYEPAVLDIGNGISYEIPPIYDKLAPMLNLPNFLDIHVDEFYLKSTLDLGSLAAMRAADKRFGTRNQAGMGEPLSQYESLQARIKAMPASNSPHKFSLKVSDVGLNLSIPEGAAGTIKRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKVRKDSALIEKEEMDRIGKIWINIVRRDIAKHHRNFTNFHRKQLIDAKRFSDYCQREVKMKVSRSLKWIKGANIRTRKLARDMLLLWKRVDKEMAEVRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSSVHSSDALPSVDENTNDQDVLFDSSDAGHNEEEDPEEAELKKEALKAAQEAVSKQRMLTNAFDSACLRFRQVDEADSLTRQLAGGSNIDLQTPSTMPVVSTVQTPELFKGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPEIKRLPYWGGLSERAVLRKSINPKDLYRREAKFHILITSYQLLVTDEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPVQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVISELTNKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDSNRGQLNDKKVMSLMNIVIQLRKVCNHPELFERNEGSTYFYFGEIPNSLPPPPFGELENIYYPGGHNPISYEIPKLVYKEIIQSSAVGHGICRESFQKYFNIFRPENVHRSIFSEDIIVKSGNFGFTHLMDLSPQEVAFMATGSFMERLLFSMMRWERKFLDEVLDFLIETTIGDPECYLEKGKVRAVSRMLLLPSRYETKFLQKKFATGPTNAPFEALMVSHQDRLSSNARLLHSAYTYIPPTRAPPICAHCSDRNFSYKMIEELHDPWVKRLFVGFARTSECNGPRKPDNPSHLIEEIDSELPISQPALQFTYGIFGSSPPVRNFDPAKLLTDSKKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYFRLDGSSTIQDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILHRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLQQKLKEIPLQVKSKQKKKPNKAIRINEEGDASLEDLTNCLDQGTANHDTSMDPEGPKSSNKKTKTASDKQKPSPKCSQKKMKGSMSNR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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