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Report for Sequence Feature Glyma10g15980

Feature Type:gene_model
Chromosome:Gm10
Start:18783554
stop:18788150
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g15980
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G20950AT Annotation by Michelle Graham. TAIR10: Glycosyl hydrolase family protein | chr5:7107609-7110775 REVERSE LENGTH=624 SoyBaseE_val: 0ISS
GO:0005975GO-bp Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process SoyBaseN/AISS
GO:0009627GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance SoyBaseN/AISS
GO:0034976GO-bp Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0009505GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0004553GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds SoyBaseN/AISS
PF00933PFAM Glycosyl hydrolase family 3 N terminal domain JGI ISS
PF01915PFAM Glycosyl hydrolase family 3 C terminal domain JGI ISS
UniRef100_G7J6L9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Beta-D-glucosidase n=1 Tax=Medicago truncatula RepID=G7J6L9_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1LA42UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LA42_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma10g15980
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g15980 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g106600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g15980
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g15980
>Glyma10g15980.1   sequence type=CDS   gene model=Glyma10g15980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGATATTCAATACCCTTTATGGGTGTTCTGCTACTGTTCTGTCTGGTTTCATCTTCAGAGGCAGAATATTTGAAGTATAAAGACCCTAAGGCGCCACTGAATGTCAGAATCAGTGACTTGTTGAAGCGAATGTCTCTCGAAGAAAAGATAGGCCAGATGACACAGATTGAAAGGAGTGTTGCTACTCCTGATGTGATGAACAAGTACTTCATTGGGAGTGTGCTCAGTGGGGGAGGGAGTGTTCCGGCAACAAAGGCATCTGCTGCGAGCTGGCAGCAAATGGTGAATCAGATGCAAAAGGCAGCATTGTCTACTCGCCTTGGGATTCCAATGATTTATGGGATAGATGCAGTTCATGGACACAACAATGTCTACAATGCTACCGTTTTTCCTCACAATGTTGGGCTAGGAGTTACCAGGGATCCTGTGCTCATAAAGAAGATTGGAGAAGCAACTGCCCTTGAAGTTAGAGCTACTGGAATTCCGTATGTCTTTGCTCCATGCATTGCGGTCTGCAGAGATCCAAGATGGGGACGTTGCTATGAAAGCTACAGCGAGGACCCTAAGATTGTTAAAACTATGACTGAAATTATACCTGGTTTGCAAGGAGATATCCCTGGCAATTCCATTAAGGGAGTTCCCTTTGTTGCTGGAAAGAACAAGGTTGCAGCTTGTGCCAAGCACTACTTAGGAGATGGTGGCACAAACAAGGGAATCAATGAGAACAACACTCTGATCAGTTACAATGGACTGCTTAGCATTCACATGCCGGCATACTATGACTCTATCATCAAGGGTGTTTCAACAGTGATGATCTCGTACTCTAGCTGGAATGGGATGAAAATGCATGCAAACAAAAAACTTATCACTGGTTACCTCAAGAACAAATTGCATTTCAAGGGTTTTGTCATATCTGATTGGCAGGGTATTGACCGGATTACCTCTCCTCCTCATGCTAACTATTCATACTCTGTTCAAGCTGGTGTCAGTGCTGGAATTGATATGATTATGGTTCCCTTCAACTACACTGAGTTCATTGATGAACTAACCCGTCAAGTAAAGAATAATATTATCCCAATCAGCAGGATTGATGATGCCGTGGCAAGAATCTTAAGAGTAAAATTTGTCATGGGCCTATTTGAAAATCCATATGCTGATCCAAGCCTCGCAAACCAACTGGGTAGCAAGGAACATAGAGAAATAGCAAGGGAAGCTGTACGGAAATCCCTAGTGTTGCTAAAGAATGGTAAATCTTACAAGAAACCACTGCTTCCTCTTCCCAAAAAGTCCACAAAAATACTGGTAGCAGGAAGTCATGCTAACAATTTGGGTTATCAATGTGGAGGATGGACAATTACCTGGCAGGGGCTTGGTGGCAATGATCTCACTTCAGGTACAACCATCCTTGATGCTGTGAAACAAACCGTTGATCCTGCCACTGAAGTTGTCTTCAATGAAAATCCTGATAAGAACTTTGTCAAGTCATACAAATTTGACTATGCCATTGTTGTTGTGGGAGAACACACTTATGCCGAAACATTTGGTGACAGTTTGAATCTGACTATGGCTGATCCTGGTCCAAGTACCATCACCAATGTGTGTGGGGCTATTCGATGCGTAGTTGTTCTTGTCACTGGCCGCCCAGTTGTGATTAAGCCATATCTACCCAAAATCGATGCACTTGTAGCTGCATGGCTTCCTGGCACCGAAGGTCAAGGTGTCGCCGACGTTCTCTACGGCGACTATGAGTTCACCGGCAAGCTGGCAAGAACATGGTTCAAGACAGTTGACCAGCTCCCAATGAATGTTGGTGATAAACATTATGATCCTCTATTTCCATTTGGATATGGGTTAACTACAAACATCACTAAATATTGA
Predicted protein sequences of Glyma10g15980
>Glyma10g15980.1   sequence type=predicted peptide   gene model=Glyma10g15980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRYSIPFMGVLLLFCLVSSSEAEYLKYKDPKAPLNVRISDLLKRMSLEEKIGQMTQIERSVATPDVMNKYFIGSVLSGGGSVPATKASAASWQQMVNQMQKAALSTRLGIPMIYGIDAVHGHNNVYNATVFPHNVGLGVTRDPVLIKKIGEATALEVRATGIPYVFAPCIAVCRDPRWGRCYESYSEDPKIVKTMTEIIPGLQGDIPGNSIKGVPFVAGKNKVAACAKHYLGDGGTNKGINENNTLISYNGLLSIHMPAYYDSIIKGVSTVMISYSSWNGMKMHANKKLITGYLKNKLHFKGFVISDWQGIDRITSPPHANYSYSVQAGVSAGIDMIMVPFNYTEFIDELTRQVKNNIIPISRIDDAVARILRVKFVMGLFENPYADPSLANQLGSKEHREIAREAVRKSLVLLKNGKSYKKPLLPLPKKSTKILVAGSHANNLGYQCGGWTITWQGLGGNDLTSGTTILDAVKQTVDPATEVVFNENPDKNFVKSYKFDYAIVVVGEHTYAETFGDSLNLTMADPGPSTITNVCGAIRCVVVLVTGRPVVIKPYLPKIDALVAAWLPGTEGQGVADVLYGDYEFTGKLARTWFKTVDQLPMNVGDKHYDPLFPFGYGLTTNITKY*






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