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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G20950 | AT | Annotation by Michelle Graham. TAIR10: Glycosyl hydrolase family protein | chr5:7107609-7110775 REVERSE LENGTH=624 | SoyBase | E_val: 0 | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0009627 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance | SoyBase | N/A | ISS |
| GO:0034976 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0009505 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0004553 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds | SoyBase | N/A | ISS |
| PF00933 | PFAM | Glycosyl hydrolase family 3 N terminal domain | JGI | ISS | |
| PF01915 | PFAM | Glycosyl hydrolase family 3 C terminal domain | JGI | ISS | |
| UniRef100_G7J6L9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Beta-D-glucosidase n=1 Tax=Medicago truncatula RepID=G7J6L9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LA42 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LA42_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma10g15980 not represented in the dataset |
Glyma10g15980 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g106600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g15980.1 sequence type=CDS gene model=Glyma10g15980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGAGATATTCAATACCCTTTATGGGTGTTCTGCTACTGTTCTGTCTGGTTTCATCTTCAGAGGCAGAATATTTGAAGTATAAAGACCCTAAGGCGCCACTGAATGTCAGAATCAGTGACTTGTTGAAGCGAATGTCTCTCGAAGAAAAGATAGGCCAGATGACACAGATTGAAAGGAGTGTTGCTACTCCTGATGTGATGAACAAGTACTTCATTGGGAGTGTGCTCAGTGGGGGAGGGAGTGTTCCGGCAACAAAGGCATCTGCTGCGAGCTGGCAGCAAATGGTGAATCAGATGCAAAAGGCAGCATTGTCTACTCGCCTTGGGATTCCAATGATTTATGGGATAGATGCAGTTCATGGACACAACAATGTCTACAATGCTACCGTTTTTCCTCACAATGTTGGGCTAGGAGTTACCAGGGATCCTGTGCTCATAAAGAAGATTGGAGAAGCAACTGCCCTTGAAGTTAGAGCTACTGGAATTCCGTATGTCTTTGCTCCATGCATTGCGGTCTGCAGAGATCCAAGATGGGGACGTTGCTATGAAAGCTACAGCGAGGACCCTAAGATTGTTAAAACTATGACTGAAATTATACCTGGTTTGCAAGGAGATATCCCTGGCAATTCCATTAAGGGAGTTCCCTTTGTTGCTGGAAAGAACAAGGTTGCAGCTTGTGCCAAGCACTACTTAGGAGATGGTGGCACAAACAAGGGAATCAATGAGAACAACACTCTGATCAGTTACAATGGACTGCTTAGCATTCACATGCCGGCATACTATGACTCTATCATCAAGGGTGTTTCAACAGTGATGATCTCGTACTCTAGCTGGAATGGGATGAAAATGCATGCAAACAAAAAACTTATCACTGGTTACCTCAAGAACAAATTGCATTTCAAGGGTTTTGTCATATCTGATTGGCAGGGTATTGACCGGATTACCTCTCCTCCTCATGCTAACTATTCATACTCTGTTCAAGCTGGTGTCAGTGCTGGAATTGATATGATTATGGTTCCCTTCAACTACACTGAGTTCATTGATGAACTAACCCGTCAAGTAAAGAATAATATTATCCCAATCAGCAGGATTGATGATGCCGTGGCAAGAATCTTAAGAGTAAAATTTGTCATGGGCCTATTTGAAAATCCATATGCTGATCCAAGCCTCGCAAACCAACTGGGTAGCAAGGAACATAGAGAAATAGCAAGGGAAGCTGTACGGAAATCCCTAGTGTTGCTAAAGAATGGTAAATCTTACAAGAAACCACTGCTTCCTCTTCCCAAAAAGTCCACAAAAATACTGGTAGCAGGAAGTCATGCTAACAATTTGGGTTATCAATGTGGAGGATGGACAATTACCTGGCAGGGGCTTGGTGGCAATGATCTCACTTCAGGTACAACCATCCTTGATGCTGTGAAACAAACCGTTGATCCTGCCACTGAAGTTGTCTTCAATGAAAATCCTGATAAGAACTTTGTCAAGTCATACAAATTTGACTATGCCATTGTTGTTGTGGGAGAACACACTTATGCCGAAACATTTGGTGACAGTTTGAATCTGACTATGGCTGATCCTGGTCCAAGTACCATCACCAATGTGTGTGGGGCTATTCGATGCGTAGTTGTTCTTGTCACTGGCCGCCCAGTTGTGATTAAGCCATATCTACCCAAAATCGATGCACTTGTAGCTGCATGGCTTCCTGGCACCGAAGGTCAAGGTGTCGCCGACGTTCTCTACGGCGACTATGAGTTCACCGGCAAGCTGGCAAGAACATGGTTCAAGACAGTTGACCAGCTCCCAATGAATGTTGGTGATAAACATTATGATCCTCTATTTCCATTTGGATATGGGTTAACTACAAACATCACTAAATATTGA
>Glyma10g15980.1 sequence type=predicted peptide gene model=Glyma10g15980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGRYSIPFMGVLLLFCLVSSSEAEYLKYKDPKAPLNVRISDLLKRMSLEEKIGQMTQIERSVATPDVMNKYFIGSVLSGGGSVPATKASAASWQQMVNQMQKAALSTRLGIPMIYGIDAVHGHNNVYNATVFPHNVGLGVTRDPVLIKKIGEATALEVRATGIPYVFAPCIAVCRDPRWGRCYESYSEDPKIVKTMTEIIPGLQGDIPGNSIKGVPFVAGKNKVAACAKHYLGDGGTNKGINENNTLISYNGLLSIHMPAYYDSIIKGVSTVMISYSSWNGMKMHANKKLITGYLKNKLHFKGFVISDWQGIDRITSPPHANYSYSVQAGVSAGIDMIMVPFNYTEFIDELTRQVKNNIIPISRIDDAVARILRVKFVMGLFENPYADPSLANQLGSKEHREIAREAVRKSLVLLKNGKSYKKPLLPLPKKSTKILVAGSHANNLGYQCGGWTITWQGLGGNDLTSGTTILDAVKQTVDPATEVVFNENPDKNFVKSYKFDYAIVVVGEHTYAETFGDSLNLTMADPGPSTITNVCGAIRCVVVLVTGRPVVIKPYLPKIDALVAAWLPGTEGQGVADVLYGDYEFTGKLARTWFKTVDQLPMNVGDKHYDPLFPFGYGLTTNITKY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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