SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G27140 | AT | Annotation by Michelle Graham. TAIR10: HSP20-like chaperones superfamily protein | chr2:11598496-11599264 REVERSE LENGTH=224 | SoyBase | E_val: 4.00E-25 | ISS |
| GO:0009408 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to heat | SoyBase | N/A | ISS |
| GO:0009644 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to high light intensity | SoyBase | N/A | ISS |
| GO:0042542 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR11527 | Panther | SMALL HEAT-SHOCK PROTEIN (HSP20) FAMILY | JGI | ISS | |
| PTHR11527:SF44 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00011 | PFAM | Hsp20/alpha crystallin family | JGI | ISS | |
| UniRef100_G7KHG4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 22.7 kDa class IV heat shock protein n=1 Tax=Medicago truncatula RepID=G7KHG4_MEDTR | SoyBase | E_val: 3.00E-37 | ISS |
| UniRef100_I1LA41 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LA41_SOYBN | SoyBase | E_val: 1.00E-142 | ISS |
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Glyma10g15950 not represented in the dataset |
Glyma10g15950 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g106800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g15950.2 sequence type=CDS gene model=Glyma10g15950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCACAAACGGATCCAAGCTCACATCAAGCAGCTAATCGTGTCTACGAAGATTTTGAACCATCTTATGAATGGGCTCAAGATGAAGAAAGTGACACGCTTATTCTTATGCTTAAAGGATTTAGAAAGGAGAATTTGAGGGTTCAAATAGGCACAAACCGTAGACTAAAACTCAGTGGTGAACAACAGATAAGTGAGAACAAATGGCATAGATTTAACAAAGAATACACCATTCCTCCTCATTCTAACACCAATGGGATCAAAGCCAAGTTACAAGGTGGCCTACTATATATAAGGCTTCCCAAAATCATCACTGAAGCTAAGTCAACAACAAAATCACCAACACCAAATCTTGAAGCTGATGACAACCAAAGAGGAACCAAAGAGACACCAACACAAGAAGAACCAAAGACAAGTGAGGTTTCTCAGACAAAGGAGATGGGGAAAGTAGGGGAAGATGATAACTGTGTTGCTCAGAATAGAGCCAAAGCTACCACTTCTGAAGCTCAGAATATGCATGAAACAATTGATGAGTTGAGTAATAAGAAGGTTGACCGAAGGTTACCTACAACCCTTTATGGCTTGGTTGGGGAGGTTGTTAAGCAAAAGAAACTGGCTAACTTGGTGGTTGTCATCTTGTTCCTTGGTATGGGAATGTATGTCAAAAATGCAATCAAGTCATTTTTTGGAGGATAA
>Glyma10g15950.2 sequence type=predicted peptide gene model=Glyma10g15950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAQTDPSSHQAANRVYEDFEPSYEWAQDEESDTLILMLKGFRKENLRVQIGTNRRLKLSGEQQISENKWHRFNKEYTIPPHSNTNGIKAKLQGGLLYIRLPKIITEAKSTTKSPTPNLEADDNQRGTKETPTQEEPKTSEVSQTKEMGKVGEDDNCVAQNRAKATTSEAQNMHETIDELSNKKVDRRLPTTLYGLVGEVVKQKKLANLVVVILFLGMGMYVKNAIKSFFGG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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