SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G42170 | AT | Annotation by Michelle Graham. TAIR10: BED zinc finger ;hAT family dimerisation domain | chr3:14321838-14323928 FORWARD LENGTH=696 | SoyBase | E_val: 5.00E-13 | ISS |
| GO:0009791 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-embryonic development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0046983 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity | SoyBase | N/A | ISS |
| PTHR10775 | Panther | AC-LIKE TRANSPOSASE-RELATED | JGI | ISS | |
| PTHR10775:SF11 | Panther | AC-LIKE TRANSPOSASE | JGI | ISS | |
| PF05699 | PFAM | hAT family dimerisation domain | JGI | ISS | |
| UniRef100_G7IE71 | UniRef | Annotation by Michelle Graham. Best UniRef hit: HAT family dimerization domain containing protein n=1 Tax=Medicago truncatula RepID=G7IE71_MEDTR | SoyBase | E_val: 5.00E-48 | ISS |
| UniRef100_G7IE71 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: HAT family dimerization domain containing protein n=1 Tax=Medicago truncatula RepID=G7IE71_MEDTR | SoyBase | E_val: 5.00E-48 | ISS |
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Glyma10g15795 not represented in the dataset |
Glyma10g15795 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g15795.1 sequence type=CDS gene model=Glyma10g15795 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATAACTATTGATGAACTTACCTCTAAGTTTGTTGAAAATGAAGGGTTTAGGAAGTTCATGGAAGATTCTCAACCTAAATTTAAAATTCCTTCTCGTGTCACTATTGCTAGATATTGCATGCATAATTGTTTAAAAGAATGGGGGATTTCAAAAGTTTTTTATGTAACAATGGATAATGCAAGTACTAATAACTTGGCCATTTCATATTTAGCTAGAGCATTGAGTGTTTGGAATGGGAATACTTTGTTGAATGGAGAGTTCACGCATATGCGATGTTTTGCTTATATTTTGAATTTAATTGTTAGTGATGGATTGAAAGAAATTGACCTATCCATTAGAAAAATGAGAGTTGTATGTAAGTTTGTGAAGTCTTCTCCAAGTAGATTTACAAGTTTTAAGAGGTGTGTTGAAGAAGTAAGTGTATTCACTAAGGTCATGTTAATACTTGATGTACCAAATAGGTGGAATTCTAATTATTTGATGTTAGATGTTGCTGAAAAATATGAGCATGCATTTTATCGTTATGAGTATGTTGAGACTGCATATGCGTTAAATCTCATATCTAGCGAAGGGGGAAGGATCTTTTTGAAGACTTTCTATGATGTAATTCTTTCTTTTTATGAGTCATTGTATGTTACTACTAACACTTCTTTTAAGAAGCTGTGGAAATTGAAAGCATCCAAATATTATATTCTTTCCTGTATGGCTAGAGATATATTAGCTATTCATATATCTACTGTATCATCTGAGTCTGCATTTAGTACAGGGAATAGAATTCTAAATTCATTTCGTAGTTCTTTGAGTCCTACTACTGTTGAAGCTCTCATTGGTGACCAAAATTGGCTTAGATCTACT
>Glyma10g15795.1 sequence type=predicted peptide gene model=Glyma10g15795 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MITIDELTSKFVENEGFRKFMEDSQPKFKIPSRVTIARYCMHNCLKEWGISKVFYVTMDNASTNNLAISYLARALSVWNGNTLLNGEFTHMRCFAYILNLIVSDGLKEIDLSIRKMRVVCKFVKSSPSRFTSFKRCVEEVSVFTKVMLILDVPNRWNSNYLMLDVAEKYEHAFYRYEYVETAYALNLISSEGGRIFLKTFYDVILSFYESLYVTTNTSFKKLWKLKASKYYILSCMARDILAIHISTVSSESAFSTGNRILNSFRSSLSPTTVEALIGDQNWLRST
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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