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Report for Sequence Feature Glyma10g15584

Feature Type:gene_model
Chromosome:Gm10
Start:18046916
stop:18047624
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g15584
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G34930AT Annotation by Michelle Graham. TAIR10: disease resistance family protein / LRR family protein | chr2:14737169-14739886 REVERSE LENGTH=905 SoyBaseE_val: 9.00E-20ISS
GO:0006952GO-bp Annotation by Michelle Graham. GO Biological Process: defense response SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF473Panther SUBFAMILY NOT NAMED JGI ISS
UniRef100_C6ZRZ4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Leucine-rich repeat protein n=1 Tax=Glycine max RepID=C6ZRZ4_SOYBN SoyBaseE_val: 5.00E-85ISS
UniRef100_UPI0002338E98UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002338E98 related cluster n=1 Tax=unknown RepID=UPI0002338E98 SoyBaseE_val: 3.00E-85ISS

Expression Patterns of Glyma10g15584
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g15584 not represented in the dataset
Glyma10g15584 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g15584 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g108700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g15584
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g15584
>Glyma10g15584.1   sequence type=CDS   gene model=Glyma10g15584   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGGATAACAATGAATTTACTGGACCTATTCCAGATTGGTTGGGGGAACATCAATATCTGCAACATCTTGGTCTAACCGAGAACATTTTTTTCGCTTCCATTCCTTCAAGTCTAGGAAATGTCACATCCTTGAACCAATTAACTGTTAGCTCCAATTTGTTGAGTGGCAATCTTCCAAACACCATTGGCCAACTCTTTAACTTGAGGAGACTATACATTGAAGGTTCCTTGTCTGGTGTTCTATCTGAAAAGCATATTTCCAAACTCTTCAATTTAGAATCAATTCTCTTGAATTCAGATTTTGCATTTAATTTGGATCCCAACTGGATTCCTCCTTTTCAGTTTCATGAAATTAGCTTGAGAAATACAATTCTAGGTCCTACAATTCCAAAATGGCTAAACACACAGAGGACACTAGATACTCTAGATATTTCTTACTCCGAAATTTCATCCATAAATGCAGACAAGTTTTTGGAGCTTTGTATCCAATATTGGAACAATTCTCTTGTCCCACGATGCAATTAG
Predicted protein sequences of Glyma10g15584
>Glyma10g15584.1   sequence type=predicted peptide   gene model=Glyma10g15584   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
LDNNEFTGPIPDWLGEHQYLQHLGLTENIFFASIPSSLGNVTSLNQLTVSSNLLSGNLPNTIGQLFNLRRLYIEGSLSGVLSEKHISKLFNLESILLNSDFAFNLDPNWIPPFQFHEISLRNTILGPTIPKWLNTQRTLDTLDISYSEISSINADKFLELCIQYWNNSLVPRCN*






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