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Report for Sequence Feature Glyma10g15211

Feature Type:gene_model
Chromosome:Gm10
Start:17688866
stop:17692347
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g15211
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G20850AT Annotation by Michelle Graham. TAIR10: tripeptidyl peptidase ii | chr4:11160935-11169889 REVERSE LENGTH=1380 SoyBaseE_val: 2.00E-45ISS
GO:0006508GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis SoyBaseN/AISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0009630GO-bp Annotation by Michelle Graham. GO Biological Process: gravitropism SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0022626GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome SoyBaseN/AISS
GO:0004252GO-mf Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity SoyBaseN/AISS
GO:0008240GO-mf Annotation by Michelle Graham. GO Molecular Function: tripeptidyl-peptidase activity SoyBaseN/AISS
PTHR10795Panther SUBTILISIN/KEXIN-RELATED SERINE PROTEASE JGI ISS
PTHR10795:SF2Panther SUBTILISIN-RELATED SERINE PROTEASE JGI ISS
PF00082PFAM Subtilase family JGI ISS
UniRef100_G7IAM4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Tripeptidyl-peptidase n=1 Tax=Medicago truncatula RepID=G7IAM4_MEDTR SoyBaseE_val: 7.00E-45ISS
UniRef100_UPI000233AD78UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233AD78 related cluster n=1 Tax=unknown RepID=UPI000233AD78 SoyBaseE_val: 3.00E-48ISS

Expression Patterns of Glyma10g15211
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g15211 not represented in the dataset
Glyma10g15211 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g15211 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g109100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g15211
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma10g15211
>Glyma10g15211.2   sequence type=transcript   gene model=Glyma10g15211   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTAATGATGGGCATGCAATATTTCTTTTTTAGCATAACTGTGACCTTATCAACATGAGTTATGTTGAAGCAACATTACTATCAGACTATGGGCGCTTTGTTGATCTTGTGAATGAGGAAGTGAACAAACATCGTCTGATATTTGTGAGCAGTGTTGGTAATAGCGGGCCAAGATTGAGCACTGTTGGTGCACCTGGTGGTACATCTTCCAGTATCATAGGTGTTGGCGCATATGTATCTCCTGCTATGGTTGTTGGTGCTCATTGTGTTGTTGAACCTCCATCTGATGAGCTTGAATACACTTGGTATATTCACTTCTCTCAAAACTTCCTCATTGATAAATTTGTTGTGCATTGTTGATCACAATGATTGAGTCAGGTCTTTTTAAACTTGTAGAATGAATTTAAGATGGGAAAACCAATTACTGATGACTTGTAATCTTATAAAACTGATGAGAAATTAAAGAGTTAACTATGCCACACTAGTTAACATCCTTAAGGAAAGA
Coding sequences of Glyma10g15211
>Glyma10g15211.1   sequence type=CDS   gene model=Glyma10g15211   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATAAACCAATGTGTATCCAAAAGCTACTCATTTCTCTGTTTCCATCTTCCGTGTTCACCTTCTCCTCTAGCAAAGCTCCCTTGTGCATCTTTAGCAAGCTCACAAGCTCATCCTTAGAGAGATTTGTGTGGCATAACTGTGACCTTATCAACATGAGTTATGTTGAAGCAACATTACTATCAGACTATGGGCGCTTTGTTGATCTTGTGAATGAGGAAGTGAACAAACATCGTCTGATATTTGTGAGCAGTGTTGGTAATAGCGGGCCAAGATTGAGCACTGTTGGTGCACCTGGTGGTACATCTTCCAGTATCATAGGTGTTGGCGCATATGTATCTCCTGCTATGGTTGTTGGTGCTCATTGTGTTGTTGAACCTCCATCTGATGAGCTTGAATACACTTGGTATATTCACTTCTCTCAAAACTTCCTCATTGATAAATTTGTTGTGCATTGTTGA

>Glyma10g15211.2   sequence type=CDS   gene model=Glyma10g15211   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTATGTTGAAGCAACATTACTATCAGACTATGGGCGCTTTGTTGATCTTGTGAATGAGGAAGTGAACAAACATCGTCTGATATTTGTGAGCAGTGTTGGTAATAGCGGGCCAAGATTGAGCACTGTTGGTGCACCTGGTGGTACATCTTCCAGTATCATAGGTGTTGGCGCATATGTATCTCCTGCTATGGTTGTTGGTGCTCATTGTGTTGTTGAACCTCCATCTGATGAGCTTGAATACACTTGGTATATTCACTTCTCTCAAAACTTCCTCATTGATAAATTTGTTGTGCATTGTTGA
Predicted protein sequences of Glyma10g15211
>Glyma10g15211.1   sequence type=predicted peptide   gene model=Glyma10g15211   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNKPMCIQKLLISLFPSSVFTFSSSKAPLCIFSKLTSSSLERFVWHNCDLINMSYVEATLLSDYGRFVDLVNEEVNKHRLIFVSSVGNSGPRLSTVGAPGGTSSSIIGVGAYVSPAMVVGAHCVVEPPSDELEYTWYIHFSQNFLIDKFVVHC*

>Glyma10g15211.2   sequence type=predicted peptide   gene model=Glyma10g15211   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSYVEATLLSDYGRFVDLVNEEVNKHRLIFVSSVGNSGPRLSTVGAPGGTSSSIIGVGAYVSPAMVVGAHCVVEPPSDELEYTWYIHFSQNFLIDKFVVHC*






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