Glyma10g15160 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma10g15160

Feature Type:	gene_model
Chromosome:	Gm10
Start:	17572898
stop:	17580739
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g15160

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_I1LA21	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LA21_SOYBN	SoyBase	E_val: 2.00E-115	ISS

Expression Patterns of Glyma10g15160

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g15160 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g109400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g15160

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g15160

Limit To All Plant Sequences

>Glyma10g15160.5   sequence type=transcript   gene model=Glyma10g15160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAACAATAAATAAAGAGTACCGAATACCCCAACCCGGTTTGCGAATCACCGCCATTCTCAAGTTTAGAACTCCCCAATCCAAGGCAACGCTGCATAACTTTGGCCACCAACACCCCCGTCTCTCATACATTCTACGAAGTGAACGTCAATGGCAAGTTGTGTTGGCACTTCACCTCTATATTTACCAGTTGGTATTGGAAATTTTCCTCATGCTCATGTTAAGCTTACTAGACCAAACATTGTTGGGATGAAACCCTTACCATATAACATCAGAAAAGGAGAACTTAAGATTGCTACATTGCAAAATCCATCATCCCATGTCAGACATGCTGCTGCTTTGCCAGGAATTGGATTGGAAGATGTGAAAATTCTGCGGAAAGAGAATTTTAAATGTGCTGCTGCAACTGCAAGTGCAACCCAAACTGTAACACGCAATTCTCGGTCAATGACTACTGACAAAGTGAAGTCTCCTAAACTTGACAACAATGGACCTGGTTTGCCACCTTACGATGGCGATGGTCATGGTGGCAACGGAGGGGGTGGAGGTAACTTTTCAGGTGGACTCATTCTTTTGGGCATTCTTGGTGTGCTAGATGTTCTCAAGGACATTGAGAAACAATGGCAACGCAAGCACAACAGATGATCTTGAACAGGTTATCTATGGTGGGAGTGAAATTACTTTACAAATCCTGATTTAGCAACGATGAGTAGAAGTCTACCGTCTATGCAAATACTTTACAGAGTTAGCTTTATGAATTCTTTTTTTTAAAAAAAAACTTTATTATACAGGTAACTTGGAACACATAAAATGCTTAGAGAAATTAATTACTAAAGAATTTGTTGATGATTTTTTTTTCATGGAGGTGTTATAAAGATAGGCATAAATAGGCTAAATTGTAATTAGTTCCCCGCGGTTCTCTTATTTTTTCAGAATAAGTAATTTTGGTTATTCCGTCGATTTACTGTCCAAAGTCAATGTCATAGGTGCTTATTTAGGTTGTTGACATAGTGAAAAATAGTATTTTTTTTTTAGGAATTAAACCCATAATATTTTATACAATTACTAGGCAATAAATCAGTACTG

>Glyma10g15160.6   sequence type=transcript   gene model=Glyma10g15160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAACAATAAATAAAGAGTACCGAATACCCCAACCCGGTTTGCGAATCACCGCCATTCTCAAGTTTAGAACTCCCCAATCCAAGGCAACGCTGCATAACTTTGGCCACCAACACCCCCGTCTCTCATACATTCTACGAAGTGAACGTCAATGGCAAGTTGTGTTGGCACTTCACCTCTATATTTACCAGTTGGTATTGGAAATTTTCCTCATGCTCATGTTAAGCTTACTAGACCAAACATTGTTGGGATGAAACCCTTACCATATAACATCAGAAAAGGAGAACTTAAGATTGCTACATTGCAAAATCCATCATCCCATGTCAGACATGCTGCTGCTTTGAATTTTAAATGTGCTGCTGCAACTGCAAGTGCAACCCAAACTGTAACACGCAATTCTCGGTCAATGACTACTGACAAAGTGAAGTCTCCTAAACTTGACAACAATGGACCTGGTTTGCCACCTTACGATGGCGATGGTCATGGTGGCAACGGAGGGGGTGGAGGTAACTTTTCAGGTGGACTCATTCTTTTGGGCATTCTTGGTGTGCTAGATGTTCTCAAGGACATTGAGAAACAATGGCAACGCAAGCACAACAGATGATCTTGAACAGGTTATCTATGGTGGGAGTGAAATTACTTTACAAATCCTGATTTAGCAACGATGAGTAGAAGTCTACCGTCTATGCAAATACTTTACAGAGTTAGCTTTATGAATTCTTTTTTTTAAAAAAAAACTTTATTATACAGGTAACTTGGAACACATAAAATGCTTAGAGAAATTAATTACTAAAGAATTTGTTGATGATTTTTTTTTCATGGAGGTGTTATAAAGATAGGCATAAATAGGCTAAATTGTAATTAGTTCCCCGCGGTTCTCTTATTTTTTCAGAATAAGTAATTTTGGTTATTCCGTCGATTTACTGTCCAAAGTCAATGTCATAGGTGCTTATTTAGGTTGTTGACATAGTGAAAAATAGTATTTTTTTTTTAGGAATTAAACCCATAATATTTTATACAATTACTAGGCAATAAATCAGTACTG

>Glyma10g15160.7   sequence type=transcript   gene model=Glyma10g15160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAACAATAAATAAAGAGTACCGAATACCCCAACCCGGTTTGCGAATCACCGCCATTCTCAAGTTTAGAACTCCCCAATCCAAGGCAACGCTGCATAACTTTGGCCACCAACACCCCCGTCTCTCATACATTCTACGTGAACGTCAATGGCAAGTTGTGTTGGCACTTCACCTCTATATTTACCAGTTGGTATTGGAAATTTTCCTCATGCTCATGTTAAGCTTACTAGACCAAACATTGTTGGGATGAAACCCTTACCATATAACATCAGAAAAGGAGAACTTAAGATTGCTACATTGCAAAATCCATCATCCCATGTCAGACATGCTGCTGCTTTGAATTTTAAATGTGCTGCTGCAACTGCAAGTGCAACCCAAACTGTAACACGCAATTCTCGGTCAATGACTACTGACAAAGTGAAGTCTCCTAAACTTGACAACAATGGACCTGGTTTGCCACCTTACGATGGCGATGGTCATGGTGGCAACGGAGGGGGTGGAGGTAACTTTTCAGGTGGACTCATTCTTTTGGGCATTCTTGGTGTGCTAGATGTTCTCAAGGACATTGAGAAACAATGGCAACGCAAGCACAACAGATGATCTTGAACAGGTTATCTATGGTGGGAGTGAAATTACTTTACAAATCCTGATTTAGCAACGATGAGTAGAAGTCTACCGTCTATGCAAATACTTTACAGAGTTAGCTTTATGAATTCTTTTTTTTAAAAAAAAACTTTATTATACAGGTAACTTGGAACACATAAAATGCTTAGAGAAATTAATTACTAAAGAATTTGTTGATGATTTTTTTTTCATGGAGGTGTTATAAAGATAGGCATAAATAGGCTAAATTGTAATTAGTTCCCCGCGGTTCTCTTATTTTTTCAGAATAAGTAATTTTGGTTATTCCGTCGATTTACTGTCCAAAGTCAATGTCATAGGTGCTTATTTAGGTTGTTGACATAGTGAAAAATAGTATTTTTTTTTTAGGAATTAAACCCATAATATTTTATACAATTACTAGGCAATAAATCAGTACTG

Coding sequences of Glyma10g15160

Limit To All Plant Sequences

>Glyma10g15160.4   sequence type=CDS   gene model=Glyma10g15160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAGTTGTGTTGGCACTTCACCTCTATATTTACCAGTTGGTATTGGAAATTTTCCTCATGCTCATGTTAAGCTTACTAGACCAAACATTGTTGGGATGAAACCCTTACCATATAACATCAGAAAAGGAGAACTTAAGATTGCTACATTGCAAAATCCATCATCCCATGTCAGACATGCTGCTGCTTTGCCAGGAATTGGATTGGAAGATGTGAAAATTCTGCGGAAAGAGAATTTTAAATGTGCTGCTGCAACTGCAAGTGCAACCCAAACTGTAACACGCAATTCTCGGTCAATGACTACTGACAAAGTGAAGTCTCCTAAACTTGACAACAATGGACCTGGTTTGCCACCTTACGATGGCGATGGTCATGGTGGCAACGGAGGGGGTGGAGGTAACTTTTCAGGTGGACTCATTCTTTTGGGCATTCTTGGTGTGCTAGATGTTCTCAAGGACATTGAGAAACAATGGCAACGCAAGCACAACAGATGA

>Glyma10g15160.5   sequence type=CDS   gene model=Glyma10g15160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAGTTGTGTTGGCACTTCACCTCTATATTTACCAGTTGGTATTGGAAATTTTCCTCATGCTCATGTTAAGCTTACTAGACCAAACATTGTTGGGATGAAACCCTTACCATATAACATCAGAAAAGGAGAACTTAAGATTGCTACATTGCAAAATCCATCATCCCATGTCAGACATGCTGCTGCTTTGCCAGGAATTGGATTGGAAGATGTGAAAATTCTGCGGAAAGAGAATTTTAAATGTGCTGCTGCAACTGCAAGTGCAACCCAAACTGTAACACGCAATTCTCGGTCAATGACTACTGACAAAGTGAAGTCTCCTAAACTTGACAACAATGGACCTGGTTTGCCACCTTACGATGGCGATGGTCATGGTGGCAACGGAGGGGGTGGAGGTAACTTTTCAGGTGGACTCATTCTTTTGGGCATTCTTGGTGTGCTAGATGTTCTCAAGGACATTGAGAAACAATGGCAACGCAAGCACAACAGATGA

>Glyma10g15160.6   sequence type=CDS   gene model=Glyma10g15160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAGTTGTGTTGGCACTTCACCTCTATATTTACCAGTTGGTATTGGAAATTTTCCTCATGCTCATGTTAAGCTTACTAGACCAAACATTGTTGGGATGAAACCCTTACCATATAACATCAGAAAAGGAGAACTTAAGATTGCTACATTGCAAAATCCATCATCCCATGTCAGACATGCTGCTGCTTTGAATTTTAAATGTGCTGCTGCAACTGCAAGTGCAACCCAAACTGTAACACGCAATTCTCGGTCAATGACTACTGACAAAGTGAAGTCTCCTAAACTTGACAACAATGGACCTGGTTTGCCACCTTACGATGGCGATGGTCATGGTGGCAACGGAGGGGGTGGAGGTAACTTTTCAGGTGGACTCATTCTTTTGGGCATTCTTGGTGTGCTAGATGTTCTCAAGGACATTGAGAAACAATGGCAACGCAAGCACAACAGATGA

>Glyma10g15160.7   sequence type=CDS   gene model=Glyma10g15160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAGTTGTGTTGGCACTTCACCTCTATATTTACCAGTTGGTATTGGAAATTTTCCTCATGCTCATGTTAAGCTTACTAGACCAAACATTGTTGGGATGAAACCCTTACCATATAACATCAGAAAAGGAGAACTTAAGATTGCTACATTGCAAAATCCATCATCCCATGTCAGACATGCTGCTGCTTTGAATTTTAAATGTGCTGCTGCAACTGCAAGTGCAACCCAAACTGTAACACGCAATTCTCGGTCAATGACTACTGACAAAGTGAAGTCTCCTAAACTTGACAACAATGGACCTGGTTTGCCACCTTACGATGGCGATGGTCATGGTGGCAACGGAGGGGGTGGAGGTAACTTTTCAGGTGGACTCATTCTTTTGGGCATTCTTGGTGTGCTAGATGTTCTCAAGGACATTGAGAAACAATGGCAACGCAAGCACAACAGATGA

Predicted protein sequences of Glyma10g15160

Limit To All Plant Sequences

>Glyma10g15160.4   sequence type=predicted peptide   gene model=Glyma10g15160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASCVGTSPLYLPVGIGNFPHAHVKLTRPNIVGMKPLPYNIRKGELKIATLQNPSSHVRHAAALPGIGLEDVKILRKENFKCAAATASATQTVTRNSRSMTTDKVKSPKLDNNGPGLPPYDGDGHGGNGGGGGNFSGGLILLGILGVLDVLKDIEKQWQRKHNR*

>Glyma10g15160.5   sequence type=predicted peptide   gene model=Glyma10g15160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASCVGTSPLYLPVGIGNFPHAHVKLTRPNIVGMKPLPYNIRKGELKIATLQNPSSHVRHAAALPGIGLEDVKILRKENFKCAAATASATQTVTRNSRSMTTDKVKSPKLDNNGPGLPPYDGDGHGGNGGGGGNFSGGLILLGILGVLDVLKDIEKQWQRKHNR*

>Glyma10g15160.6   sequence type=predicted peptide   gene model=Glyma10g15160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASCVGTSPLYLPVGIGNFPHAHVKLTRPNIVGMKPLPYNIRKGELKIATLQNPSSHVRHAAALNFKCAAATASATQTVTRNSRSMTTDKVKSPKLDNNGPGLPPYDGDGHGGNGGGGGNFSGGLILLGILGVLDVLKDIEKQWQRKHNR*

>Glyma10g15160.7   sequence type=predicted peptide   gene model=Glyma10g15160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASCVGTSPLYLPVGIGNFPHAHVKLTRPNIVGMKPLPYNIRKGELKIATLQNPSSHVRHAAALNFKCAAATASATQTVTRNSRSMTTDKVKSPKLDNNGPGLPPYDGDGHGGNGGGGGNFSGGLILLGILGVLDVLKDIEKQWQRKHNR*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain