Glyma10g15090 - SoyBase

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Report for Sequence Feature Glyma10g15090

Feature Type:	gene_model
Chromosome:	Gm10
Start:	17525123
stop:	17527700
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g15090

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G62590	AT	Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein \| chr3:23147973-23150169 REVERSE LENGTH=649	SoyBase	E_val: 5.00E-11	ISS
GO:0006629	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid metabolic process	SoyBase	N/A	ISS
GO:0016036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation	SoyBase	N/A	ISS
GO:0019375	GO-bp	Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process	SoyBase	N/A	ISS
GO:0042631	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation	SoyBase	N/A	ISS
GO:0004806	GO-mf	Annotation by Michelle Graham. GO Molecular Function: triglyceride lipase activity	SoyBase	N/A	ISS
UniRef100_G7IDS8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lipase n=1 Tax=Medicago truncatula RepID=G7IDS8_MEDTR	SoyBase	E_val: 5.00E-10	ISS
UniRef100_I1LA17	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LA17_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g15090

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g15090 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma10g15090

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g15090

Limit To All Plant Sequences

>Glyma10g15090.1   sequence type=CDS   gene model=Glyma10g15090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGCAGCAAAGGAGGAAGTAAAGCAGGGTGTTGCAGATGATCTGAACTCTACACATTCAACACCCTGTGAGTGGTTTGTCTATCATGATGACAAGAGTGCTACAAGGTGTATCGCTATTCAGAGAATTTTGGAAAATCAAGCTAAACCTTCAAATGGGTCAGTGGAGAGAGAAGCTGAACCTTCAAATGGAGAAGTAGAGAGTGAAGCTGAACCTTCACAAGGTGCAGTACATAGTGAAGTTGAACCTTCAAATGATGCAATGGAGGGTGAAGCTAAACCTTCACAAGGTGCAGTGGAGACTAAAGCTGAGCCTTCACAAGATGCAGTGGAGAGTAAAGCTTCTCTTTCAAATGGTGCATTGAACCGTGAAGCTGAAACAGCAAGTGGTGCAATGGAGAGTGAAGCAAAAACTTCAAGTGGTGCAGTGGAGACTGAATTTAAACCTTCACATGATACTGAAAGTGAACCTTCTGTTGATGTGTGTCAGACGAAAAAAGATGTAGTGAATAGTAAAGCTGAAACTTCAAGTGGTGCCCTGCAGAGTGAAAGAGAGGCTTGTGTTATTGAAGGTAGTAATCAAGGAGATGAAGATTCAAGACTTGCCTCAGATGCTTTGGATGGACAGAATGTGGGTACAAAGGTAGTGAAAAACCCATTCTACTATTTGATCAGGGTTCCCAGATATGATGATGATGAAAACATAAAAACGCTCTTCACCAAGGCTACAATAGCAGCCCATAGAGCTGCTCGTGACTTGCTCAAATCCAAACGGTGGGAAATAGATTTAGTCCAATCCATAATGAACAGATTAAACAATGCAATTTATGTTGGGGATATAGATGGCAAGAACTGTGAGGAGTTGTCTTCTAATATGAAAAAGCGGGATCAATCACAACAATCTGTAGACAAGAAGGATGACAATATTGAAGAGCACTTTAAGGGGATTTCATTTACAGCTTTTGAAGAAGGAAATGGAATTCCCTTTTTACTATACACACTAACATTGGTTTCCACCTTCCATCTCTTGCAACCACGCTCAAAATCGAAACATAATTATGGCTATTATTCCAAAAGTTCATCACAAAGGCCTTTTCATGGGCATTTATTAAAATTGGACAAAAGCATAACAGAAAATTGCATTCCTTATAGATCTCAAAATGTTAGTCATTCACATATGACATTCTTCCCCTCATTCCATTGA

Predicted protein sequences of Glyma10g15090

Limit To All Plant Sequences

>Glyma10g15090.1   sequence type=predicted peptide   gene model=Glyma10g15090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVAAKEEVKQGVADDLNSTHSTPCEWFVYHDDKSATRCIAIQRILENQAKPSNGSVEREAEPSNGEVESEAEPSQGAVHSEVEPSNDAMEGEAKPSQGAVETKAEPSQDAVESKASLSNGALNREAETASGAMESEAKTSSGAVETEFKPSHDTESEPSVDVCQTKKDVVNSKAETSSGALQSEREACVIEGSNQGDEDSRLASDALDGQNVGTKVVKNPFYYLIRVPRYDDDENIKTLFTKATIAAHRAARDLLKSKRWEIDLVQSIMNRLNNAIYVGDIDGKNCEELSSNMKKRDQSQQSVDKKDDNIEEHFKGISFTAFEEGNGIPFLLYTLTLVSTFHLLQPRSKSKHNYGYYSKSSSQRPFHGHLLKLDKSITENCIPYRSQNVSHSHMTFFPSFH*

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