SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G11240 | AT | Annotation by Michelle Graham. TAIR10: transducin family protein / WD-40 repeat family protein | chr5:3582949-3586782 FORWARD LENGTH=615 | SoyBase | E_val: 2.00E-86 | ISS |
| GO:0000478 | GO-bp | Annotation by Michelle Graham. GO Biological Process: endonucleolytic cleavage involved in rRNA processing | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009220 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| PTHR22847 | Panther | WD40 REPEAT PROTEIN | JGI | ISS | |
| PTHR22847:SF201 | Panther | OS03G0300300 PROTEIN | JGI | ISS | |
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | ISS | |
| UniRef100_G7JLK9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: WD40 repeat-containing protein SMU1 n=1 Tax=Medicago truncatula RepID=G7JLK9_MEDTR | SoyBase | E_val: 1.00E-92 | ISS |
| UniRef100_UPI000233C223 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C223 related cluster n=1 Tax=unknown RepID=UPI000233C223 | SoyBase | E_val: 2.00E-142 | ISS |
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Glyma10g14885 not represented in the dataset |
Glyma10g14885 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g110200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g14885.1 sequence type=CDS gene model=Glyma10g14885 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCAACGGACGTCAGAGGCATTTTGACAGCTTTCAATCCTTCTCTCGACTTCTTCGCTATCACCACCGGAGACGGTCGCGTCAAGATATGGGACACACTGAAGGGTCAGGTCCACACCGAGTTCGCTGATATCACCTCAACTCATTCAACTGCTACTACCTTACATCATAAATCATCCATTAACGGCCATCTTGCGCTAGATTATACTTGCATCAAGTGGTTCTCCTTCGAAGAAAAGAGGAAAAGGAAGCATATATCCTCCTTGTTGGTGCTTGGAACTGGTGGTGGTGATGTTTTAGCACTTGATGTCGCTTCTGCTCAATTGACTTGGAGACTTACTGACTGTCATCCTGGAGGTGTGAGAGTCATTGCATCTTCAGCAAATGTGTCAAGCATTTATACTGCTGGTGTAGATGGGATGGTATGTGTGATAGATTTCATGACAGGAAACCTGTTGGAGAAATTTAAAGCTTCTACAAAGCCAGTATCCTGCATGTCTGTTTCTCCAGATGGGAACACATTAGCTACTGCAGCAGCACAATTGAAGATTTTTAACTGTTCTAATCACAAAAAGATTCAAAAGTTCTCTGGTCATCCTGGGAGTCTCGTATATTTCCAGATATACATGCATATACTCTATCAGTGCCCTTTTAATTTGTCCTAA
>Glyma10g14885.1 sequence type=predicted peptide gene model=Glyma10g14885 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASTDVRGILTAFNPSLDFFAITTGDGRVKIWDTLKGQVHTEFADITSTHSTATTLHHKSSINGHLALDYTCIKWFSFEEKRKRKHISSLLVLGTGGGDVLALDVASAQLTWRLTDCHPGGVRVIASSANVSSIYTAGVDGMVCVIDFMTGNLLEKFKASTKPVSCMSVSPDGNTLATAAAQLKIFNCSNHKKIQKFSGHPGSLVYFQIYMHILYQCPFNLS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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