Glyma10g14660 - SoyBase

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Report for Sequence Feature Glyma10g14660

Feature Type:	gene_model
Chromosome:	Gm10
Start:	16912367
stop:	16915466
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g14660

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G54290	AT	Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haemerythrin/HHE cation-binding motif (InterPro:IPR012312); Has 59 Blast hits to 59 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). \| chr3:20104623-20105845 REVERSE LENGTH=350	SoyBase	E_val: 1.00E-93	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0006661	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol biosynthetic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF01814	PFAM	Hemerythrin HHE cation binding domain	JGI		ISS
UniRef100_I1LA07	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LA07_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g14660

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g14660 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g111100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g14660

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g14660

Limit To All Plant Sequences

>Glyma10g14660.1   sequence type=CDS   gene model=Glyma10g14660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTAACTGTCTGCGCACGTCGGAAAAGCTGACGGCGGAGATCGTTCCCCACGGCGGCGCCACCGTGTACCCCGCCGTGCGCCTCCACGGCTCCCCCAACAGCATTTTCGCCGCATACACTCGCTTCGCGGTCCTTCACAACGCCGTTCCCCCGGACCCTGTCCTCGCCGCCGCACCACCACCGCAGGCCCCAACAGCATTTTGTGGCGGAAGATCTGAGGCGGCGGTTCCCGTGGTTTTCCACGTGGGACACGACGTCGCGTCGGGGTCCCGCGACGCGCTGCTCCGGTTTATAGACTTGAAATTCCCCGACCTGGCGGAGGAGGAGACGGCGCCACCTCCTCCGGCGGAGAGCGGCGGAGGGAAGGAGGAAACGTCGTTGGTTGTGAGGGTGACGCGGCTGCAGCATAAGAGCATGACTTGGCACTTGGAGAGGATGGTGGGGTGGGCGGAGGATCTAGCGACACGTGGCGGAACGAGGGCCGTTGATCCAAAGGTGGGGACTTGGAAGATGGAGGTTGTGAAATTTGGGAGAAGTTACTCTCAGTTGTTGGAGGTGATGTTGGAACATGCACAAATGGAAGAGAGAGTTCTATTTCCTATCTTTGATAGTGCTGATCGAGGGCTATCTAAAGCTGCAAAGGAGGAACATGCTAGGGACCTACCAATCATGAATGGCATCAAAGAAATTATTAAATCCGTTGAGGTTTTAGACTCACGCAGCCTCAATTACAAAGAGACTTTGTACAACCTTTCTAATAGGCTCAAATCATTACAGGGACTTTGCAAGCAACACTTCATGGAAGAGGATTCAGAATTACTTCCAATAATGGAAGCAGTGGGGTTGAGCAAAGAGGAGGAGGAGGATGCATTAGAGCATTGTTTTGTTGTGATGCAAGGAACACATGGCCGGTTGTTAAAGTTCCTTCTTGAGGGGCTCCCACCTAATGATTCTATGAAGTACTTGGACTTGATCAGCATGTGCAGGGACAAAGAGAGGATGGAATCCATGCTTAGGGTGGTAGTGGAGTGA

Predicted protein sequences of Glyma10g14660

Limit To All Plant Sequences

>Glyma10g14660.1   sequence type=predicted peptide   gene model=Glyma10g14660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNCLRTSEKLTAEIVPHGGATVYPAVRLHGSPNSIFAAYTRFAVLHNAVPPDPVLAAAPPPQAPTAFCGGRSEAAVPVVFHVGHDVASGSRDALLRFIDLKFPDLAEEETAPPPPAESGGGKEETSLVVRVTRLQHKSMTWHLERMVGWAEDLATRGGTRAVDPKVGTWKMEVVKFGRSYSQLLEVMLEHAQMEERVLFPIFDSADRGLSKAAKEEHARDLPIMNGIKEIIKSVEVLDSRSLNYKETLYNLSNRLKSLQGLCKQHFMEEDSELLPIMEAVGLSKEEEEDALEHCFVVMQGTHGRLLKFLLEGLPPNDSMKYLDLISMCRDKERMESMLRVVVE*

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