Glyma10g14630 - SoyBase

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Report for Sequence Feature Glyma10g14630

Feature Type:	gene_model
Chromosome:	Gm10
Start:	16821889
stop:	16824959
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g14630

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G54260	AT	Annotation by Michelle Graham. TAIR10: TRICHOME BIREFRINGENCE-LIKE 36 \| chr3:20085097-20086745 REVERSE LENGTH=379	SoyBase	E_val: 2.00E-171	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010089	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylem development	SoyBase	N/A	ISS
GO:0044036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process	SoyBase	N/A	ISS
PTHR13533	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR13533:SF3	Panther	gb def: unknown protein [takifugu rubripes]	JGI		ISS
PF03005	PFAM	Arabidopsis proteins of unknown function	JGI		ISS
UniRef100_I1LA06	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LA06_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q940H3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein trichome birefringence-like 36 n=1 Tax=Arabidopsis thaliana RepID=Q940H3_ARATH	SoyBase	E_val: 8.00E-169	ISS

Expression Patterns of Glyma10g14630

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g14630 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g111200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g14630

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g14630

Limit To All Plant Sequences

>Glyma10g14630.1   sequence type=CDS   gene model=Glyma10g14630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACACCAAAGATTCACTTGCTTGTTTCGTCTTTCTTGTTGTGTGGTACCTTCCTGAGCTTGTTCCACTGCACATTGTCCCTTCTGAACCCTGAGGATGGGGTTGGCATTCTGGTGCAAGCTGATGATGATGTTAGCATGGCCCAAAGCAACAGAGATTCTAGGAAGAGATGTGACATTTCTGTTGGAAAATGGGTTTATGATGACTCTTACCCTCTCTATGACTCTAGTTGTCCATATCTCAGCTCTGCCGTTACTTGTCAAAGGAATGGGAGACCTGATTCTGACTATGAGAAGTGGAAGTGGAAGCCAAGTGGTTGTACCATGCCAAGATTTGATGCACTAAGGTTTCTAGGAAGAATGAGAAGAAAGAGAATAATGCTGGTGGGCGATTCAATAATGAGAAATCAGTGGGAATCTCTTGTTTGCTTAGTGCAAGGAGTTATTCCAACTGGTCGAAAAAGGGTGACTTATAACGGACCTGGAATGGCCTTCCATGCCATGGATTTTGAGACCTCAATTGAGTTTTTCTGGGCACCCCTGTTGGTAGAACTGAAGAAAGGTTCAGAAAATAAGAGAATTTTACATCTTGATTTGATTGAAGAAAATGCAAGGTATTGGAGAGGAGTTGATATCCTTGTATTTGATTCAGCCCATTGGTGGACTCACCCAGATCAAACCAGCTCGTGGGATTACTACCTGGAGGGAAACAATCTCACCAGGAATATGAATCCCATGGTTGCTTACCAGAAAGGACTCAGTACATGGGCAAGGTGGGTGGATCAAAATCTAAACCCTAGGAGAACTGAAGTCATTTTTAGAAGCATGTCTCCTAGGCATAACAGGGAAAATGGTTGGAAATGCTACAATCAGAAGCAGCCTCTACCATTTTCCAGCCACCTACATGTTCCTGAACCTTTGGCAGTGCTACAAGGAGTGTTGAAGAGAATGAGATTTCCAGTATATCTGCAAGACATCACAACAATGACCGCGTTGCGCAGAGACGGGCATCCCTCGGTATATAGGAGGGTAATAAGCCAAGATGAGAAGCAGAAACCAGGAAAAGGCCATTCCTCTGATTGCAGCCATTGGTGCCTCCCTGGGGTGCCTGATATTTGGAATGAGATGCTGAGTGCACTGCTGTGA

Predicted protein sequences of Glyma10g14630

Limit To All Plant Sequences

>Glyma10g14630.1   sequence type=predicted peptide   gene model=Glyma10g14630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATPKIHLLVSSFLLCGTFLSLFHCTLSLLNPEDGVGILVQADDDVSMAQSNRDSRKRCDISVGKWVYDDSYPLYDSSCPYLSSAVTCQRNGRPDSDYEKWKWKPSGCTMPRFDALRFLGRMRRKRIMLVGDSIMRNQWESLVCLVQGVIPTGRKRVTYNGPGMAFHAMDFETSIEFFWAPLLVELKKGSENKRILHLDLIEENARYWRGVDILVFDSAHWWTHPDQTSSWDYYLEGNNLTRNMNPMVAYQKGLSTWARWVDQNLNPRRTEVIFRSMSPRHNRENGWKCYNQKQPLPFSSHLHVPEPLAVLQGVLKRMRFPVYLQDITTMTALRRDGHPSVYRRVISQDEKQKPGKGHSSDCSHWCLPGVPDIWNEMLSALL*

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