Glyma10g14610 - SoyBase

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Report for Sequence Feature Glyma10g14610

Feature Type:	gene_model
Chromosome:	Gm10
Start:	16770304
stop:	16772125
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g14610

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G18860	AT	Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 61 \| chr1:6509494-6511209 FORWARD LENGTH=480	SoyBase	E_val: 8.00E-39	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0010043	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to zinc ion	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
UniRef100_B9S2A5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WRKY transcription factor, putative n=1 Tax=Ricinus communis RepID=B9S2A5_RICCO	SoyBase	E_val: 6.00E-54	ISS
UniRef100_I1J5L7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1J5L7_SOYBN	SoyBase	E_val: 4.00E-175	ISS

Proteins Associated with Glyma10g14610

Locus	Gene Symbol	Protein Name
	WRKY129	WRKY Transcription Factor

Expression Patterns of Glyma10g14610

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g14610 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g111400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g14610

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g14610

Limit To All Plant Sequences

>Glyma10g14610.2   sequence type=CDS   gene model=Glyma10g14610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGATGGGTGCCATTGCAGAAAATATGGGCAGAAAATGGGCAAAGGAAATCCATGCCCCCGAGCTTACTATCGATGTACTGCTTCTCCATCTTGTCCAGTAAGAAAACAGGTGCAAAGATGTGCTGAAGACATGTCCATATTGATTACCACCTATGAAGGAACTCACAATAACCCGCTTCCTATGTCAGCCACTGCAATGGCCTGCAAAACTTTTGCTACAGCTTCCATGCTCCAATCTCCCTCATTGAGTTCACAACATGGATTAGTTGATTCAGCTATATCCTCCATCATCAACTCTAGTGCTCCTTATTACAACCCTAATAATGCTCTAAACTTCTCTACACACCAAGTTTCAAGACGACAACAATTCTACTTCCCCAACTCATCCATTTCAACCTTGAATTCTCACCCCACAATCACTTTAGACCTTACAACACCTCCAACTTCTTCCTCAAATTCAAGCTTCACTTGCATGCCAAAATATTCATCAACAAACCTTAACTTTTCCTCAGGTTTCTCTCCTCTACATTCTAGCATGCCGCAATCACCTTGGAACAGGTATAGTGGTTACTCCAACTCTGGAACACTTTATCAAAATAGACACCAAGGTGGTAATTACATGTTAAACACGGGAAATCAAAATCAGCCACATTCTGTAGGGCATCTCCATCAACCTATTTACATGAGCAACAATAGTACCATTTCTCAGCATTCTTTCCCTAATCCCATTGTTGCTGCAACTGAGGCAATAATCAGAAGCAACCCAAAATTTCAATCAGCACTAGCAATTGCTCTCACAACATATGTTGGCAATGAAGCTAGTAGTGGTAGGACAAGAGAAAATCATGTTCTTGAGAGTGCAGAACTGATGAAGTTAAAGCTGCTACGTAGTGAAAATAGTATAGGAAACTCAAGTATATTTCCACTACCACTACCGGAGCAAAGGAAGTGA

Predicted protein sequences of Glyma10g14610

Limit To All Plant Sequences

>Glyma10g14610.2   sequence type=predicted peptide   gene model=Glyma10g14610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNDGCHCRKYGQKMGKGNPCPRAYYRCTASPSCPVRKQVQRCAEDMSILITTYEGTHNNPLPMSATAMACKTFATASMLQSPSLSSQHGLVDSAISSIINSSAPYYNPNNALNFSTHQVSRRQQFYFPNSSISTLNSHPTITLDLTTPPTSSSNSSFTCMPKYSSTNLNFSSGFSPLHSSMPQSPWNRYSGYSNSGTLYQNRHQGGNYMLNTGNQNQPHSVGHLHQPIYMSNNSTISQHSFPNPIVAATEAIIRSNPKFQSALAIALTTYVGNEASSGRTRENHVLESAELMKLKLLRSENSIGNSSIFPLPLPEQRK*

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