Glyma10g14340 - SoyBase

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Report for Sequence Feature Glyma10g14340

Feature Type:	gene_model
Chromosome:	Gm10
Start:	16562104
stop:	16567140
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g14340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G36290	AT	Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein \| chr2:15208867-15210768 REVERSE LENGTH=364	SoyBase	E_val: 4.00E-157	ISS
GO:0000041	GO-bp	Annotation by Michelle Graham. GO Biological Process: transition metal ion transport	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009805	GO-bp	Annotation by Michelle Graham. GO Biological Process: coumarin biosynthetic process	SoyBase	N/A	ISS
GO:0009963	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG1454	KOG	Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily)	JGI		ISS
PTHR10992	Panther	ALPHA/BETA HYDROLASE RELATED	JGI		ISS
PTHR10992:SF198	Panther	ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN	JGI		ISS
PF00561	PFAM	alpha/beta hydrolase fold	JGI		ISS
UniRef100_B9SRW3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Catalytic, putative n=1 Tax=Ricinus communis RepID=B9SRW3_RICCO	SoyBase	E_val: 1.00E-163	ISS
UniRef100_I1LA04	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LA04_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g14340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g14340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g111700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g14340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g14340

Limit To All Plant Sequences

>Glyma10g14340.1   sequence type=CDS   gene model=Glyma10g14340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGAGAAGAATTGCAGCAATTTTCTTGATAGGCTTTTTGGCCTTGGCATATCAAGCCATTCACCCTCCACCCCCAAGAACATGTGGTAGTTCCCCTGAAGGTCCTCTTATCACAGGGCCAAGGATTAAGCTCAGAGATGGAAGGCACATAGCATACAAGGAACATGGTGTTCCTAGAGAAGAAGCCAAGAAGAAGATTGTGTTCTTACATGGGTTCGGTTCTAGTAGACATGATGCTGTGATTGCAACACACCTTCCCCAAGGACTTGTTGAGGAACTTGGAGTGTACATTGTGTCTTTTGATAGACCAGGGTATGGAGAAAGTGACCCTGATCCTAATCGAACGGTGAAAAGTTTGGCTCTTGATGTTGAAGAGCTTGCAGATAAGTTGGGGATGGGAGCTAAGTTCTATGTCATGGGATTTTCTATGGGAGGACAAGCTGTTTGGGGTTGCCTCAAGTTCATACCTCATAGACTTGCTGGGGCGACACTAATGACTCCAGTGGTGAATTATTGGTGGCATAACCTTCCTTTGAACATGACCACAAAAGCCTACTACAAGCAACCCAAACATGATCAATGGGCACTAAGAGTTGCTCACTACTTTCCTTGGCTAACATATTGGTGGTTTACTCAGGAGTGGTTTCCTTCATCTAGTGTTGTACAACGCAATCCTGCTGTTTTCTCCAATCAAGATTTATCAATCGTTTCCAAGTTCTTAATTAACAGACAACAACAGTCACAGGTGCAGCAACAAGGTGAAGCTGAATCCATTTGTCGTGACGCCATAGTTGGGTTTGGAAGTTGGGATTTTGATCCCCTTGATATTAATAATCCTTTCCCAGATAGCACAGGCCATGTTCATCTATGGCAAGGCGATGACGATAAGCTTGTCCCAGTTATGTTGCAACGCTATATTGCCCAAAATATTCCCTGGATTCATTACCATGAAGTGCCAGGTTCTGGACACTTGTTTCCATACATGGAGGAAGTGAGTGCCACTATCATCAAAACACAATTAGTGGATTAA

Predicted protein sequences of Glyma10g14340

Limit To All Plant Sequences

>Glyma10g14340.1   sequence type=predicted peptide   gene model=Glyma10g14340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLRRIAAIFLIGFLALAYQAIHPPPPRTCGSSPEGPLITGPRIKLRDGRHIAYKEHGVPREEAKKKIVFLHGFGSSRHDAVIATHLPQGLVEELGVYIVSFDRPGYGESDPDPNRTVKSLALDVEELADKLGMGAKFYVMGFSMGGQAVWGCLKFIPHRLAGATLMTPVVNYWWHNLPLNMTTKAYYKQPKHDQWALRVAHYFPWLTYWWFTQEWFPSSSVVQRNPAVFSNQDLSIVSKFLINRQQQSQVQQQGEAESICRDAIVGFGSWDFDPLDINNPFPDSTGHVHLWQGDDDKLVPVMLQRYIAQNIPWIHYHEVPGSGHLFPYMEEVSATIIKTQLVD*

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