Glyma10g14310 - SoyBase

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Report for Sequence Feature Glyma10g14310

Feature Type:	gene_model
Chromosome:	Gm10
Start:	16388989
stop:	16404837
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g14310

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G56160	AT	Annotation by Michelle Graham. TAIR10: Sodium Bile acid symporter family \| chr3:20837733-20841541 REVERSE LENGTH=436	SoyBase	E_val: 7.00E-141	ISS
GO:0006814	GO-bp	Annotation by Michelle Graham. GO Biological Process: sodium ion transport	SoyBase	N/A	ISS
GO:0035725	GO-bp	Annotation by Michelle Graham. GO Biological Process: sodium ion transmembrane transport	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0008508	GO-mf	Annotation by Michelle Graham. GO Molecular Function: bile acid:sodium symporter activity	SoyBase	N/A	ISS
KOG4821	KOG	Predicted Na+-dependent cotransporter	JGI		ISS
PTHR18640	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR18640:SF1	Panther	gb def: Hypothetical protein F18O21 120	JGI		ISS
PF01758	PFAM	Sodium Bile acid symporter family	JGI		ISS
UniRef100_B9SG77	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Bile acid:sodium symporter, putative n=1 Tax=Ricinus communis RepID=B9SG77_RICCO	SoyBase	E_val: 8.00E-163	ISS
UniRef100_I1LA03	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LA03_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g14310

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g14310 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g111800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g14310

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g14310

Limit To All Plant Sequences

>Glyma10g14310.1   sequence type=CDS   gene model=Glyma10g14310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCACATTAGCTACCTCTTCCCAAGTACTGTTAAGACTTCAGCCACCGCACTCGATGGAGCCAATGGCCCACTCACTCACCCTAACTCCGTTTCCCGCCACCGCTTCCTCCTTCCGCCACCGTCACCTCTACGCCGTTAAAGCCCTAACTCTTCGCTCCGTCACTCGCCGTTTAAAACCCGCACTCGTTAGAGCCTGTGATCGGTCACAACAGATGGGTGGTAATGGAAGCAAAGAGACGAAGGGATTGAGTTGGGTGGAACCCATTTTGACATTTGCTAGGAGAAACATTCTACCCTTGGCTCTGGTTAGTGCAGTGACATTAGGATTAACATATCCTAGTATTGGTTGTGTTGCTGATAAATACGGTGTGTCAAAAATTGGTCCATTTGGTATTTTTGTTATCTCAGGATTGATGTTGCGTAGTGAAGAAATCGGTGCAGCAGTAGAAGCATGGCCTGTTGGACTCTTTGGGCTTGTGTCTATTTTATTTCTTACACCATACTTTTCTAGGGTAATATTGCAAATTCAGCTCCAACCCCAGGAATTTATTACAGGGCTGGCTATATTTGCCTGTATGCCAACTACATTATCAAGTGGTGTTGCACTTACCCAGCTTGCTGGGGGAAATTCTGCACTTGCTCTTGCAATGACTGTGATATCTAACATGTTAGGAATATTGATTATTCCACTATCCATCACAAAATTTGTAGCTGCTGGAGTTGGAGTGACTCTACCTACCAAGCAGTTATTTAAAAGTCTTGTTCTGACCATATTAATCCCCCTTATTTTGGGAAAGGTTCTACGTGAATCTTTTAAAGGTGTGGCTGACTTTGTTGACAAAAACCGCAAGCTTTTCACAGTGATCAGTGCACTTTTCCTTAGCCTAGTACCTTGGACACAAGTGAGTAGGTCAAGGTCATTGCTGTTAATGGTGAAGCCCAGTGTTTTTCTTGTAGCTATTGGACTGGGAACGCTTCTTCATCTGTCTTTATTGGTATTTAATATCCTTGCTGTCTGGGGTCTTTCAGTTATCTCCGGTGGTAAAAATTCAATTTTTTCCCGGGAACAAAATGCCAGTGCACTCGTACTAGTAGCAAGCCAGAAAACATTACCTGTAATGGTAGCAGTGATAGAGCCACTTCGAGGTGCATTTGGAGAATCTGGGTTACTGGTTCTTCCTTGTGTTGCAGCACATCTCAACCAGATTATTCTTGACACTTTTATCGTTAACTTCTTGCGTCCCCAAGACAATTCCAACAATGTCAAGGTGGCTTAA

Predicted protein sequences of Glyma10g14310

Limit To All Plant Sequences

>Glyma10g14310.1   sequence type=predicted peptide   gene model=Glyma10g14310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFTLATSSQVLLRLQPPHSMEPMAHSLTLTPFPATASSFRHRHLYAVKALTLRSVTRRLKPALVRACDRSQQMGGNGSKETKGLSWVEPILTFARRNILPLALVSAVTLGLTYPSIGCVADKYGVSKIGPFGIFVISGLMLRSEEIGAAVEAWPVGLFGLVSILFLTPYFSRVILQIQLQPQEFITGLAIFACMPTTLSSGVALTQLAGGNSALALAMTVISNMLGILIIPLSITKFVAAGVGVTLPTKQLFKSLVLTILIPLILGKVLRESFKGVADFVDKNRKLFTVISALFLSLVPWTQVSRSRSLLLMVKPSVFLVAIGLGTLLHLSLLVFNILAVWGLSVISGGKNSIFSREQNASALVLVASQKTLPVMVAVIEPLRGAFGESGLLVLPCVAAHLNQIILDTFIVNFLRPQDNSNNVKVA*

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