SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research



Report for Sequence Feature Glyma10g14310

Feature Type:gene_model
Chromosome:Gm10
Start:16388989
stop:16404837
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G56160AT Annotation by Michelle Graham. TAIR10: Sodium Bile acid symporter family | chr3:20837733-20841541 REVERSE LENGTH=436 SoyBaseE_val: 7.00E-141ISS
GO:0006814GO-bp Annotation by Michelle Graham. GO Biological Process: sodium ion transport SoyBaseN/AISS
GO:0035725GO-bp Annotation by Michelle Graham. GO Biological Process: sodium ion transmembrane transport SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0008508GO-mf Annotation by Michelle Graham. GO Molecular Function: bile acid:sodium symporter activity SoyBaseN/AISS
KOG4821 KOG Predicted Na+-dependent cotransporter JGI ISS
PTHR18640Panther FAMILY NOT NAMED JGI ISS
PTHR18640:SF1Panther gb def: Hypothetical protein F18O21 120 JGI ISS
PF01758PFAM Sodium Bile acid symporter family JGI ISS
UniRef100_B9SG77UniRef Annotation by Michelle Graham. Most informative UniRef hit: Bile acid:sodium symporter, putative n=1 Tax=Ricinus communis RepID=B9SG77_RICCO SoyBaseE_val: 8.00E-163ISS
UniRef100_I1LA03UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LA03_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g111800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma10g14310.1   sequence type=CDS   gene model=Glyma10g14310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCACATTAGCTACCTCTTCCCAAGTACTGTTAAGACTTCAGCCACCGCACTCGATGGAGCCAATGGCCCACTCACTCACCCTAACTCCGTTTCCCGCCACCGCTTCCTCCTTCCGCCACCGTCACCTCTACGCCGTTAAAGCCCTAACTCTTCGCTCCGTCACTCGCCGTTTAAAACCCGCACTCGTTAGAGCCTGTGATCGGTCACAACAGATGGGTGGTAATGGAAGCAAAGAGACGAAGGGATTGAGTTGGGTGGAACCCATTTTGACATTTGCTAGGAGAAACATTCTACCCTTGGCTCTGGTTAGTGCAGTGACATTAGGATTAACATATCCTAGTATTGGTTGTGTTGCTGATAAATACGGTGTGTCAAAAATTGGTCCATTTGGTATTTTTGTTATCTCAGGATTGATGTTGCGTAGTGAAGAAATCGGTGCAGCAGTAGAAGCATGGCCTGTTGGACTCTTTGGGCTTGTGTCTATTTTATTTCTTACACCATACTTTTCTAGGGTAATATTGCAAATTCAGCTCCAACCCCAGGAATTTATTACAGGGCTGGCTATATTTGCCTGTATGCCAACTACATTATCAAGTGGTGTTGCACTTACCCAGCTTGCTGGGGGAAATTCTGCACTTGCTCTTGCAATGACTGTGATATCTAACATGTTAGGAATATTGATTATTCCACTATCCATCACAAAATTTGTAGCTGCTGGAGTTGGAGTGACTCTACCTACCAAGCAGTTATTTAAAAGTCTTGTTCTGACCATATTAATCCCCCTTATTTTGGGAAAGGTTCTACGTGAATCTTTTAAAGGTGTGGCTGACTTTGTTGACAAAAACCGCAAGCTTTTCACAGTGATCAGTGCACTTTTCCTTAGCCTAGTACCTTGGACACAAGTGAGTAGGTCAAGGTCATTGCTGTTAATGGTGAAGCCCAGTGTTTTTCTTGTAGCTATTGGACTGGGAACGCTTCTTCATCTGTCTTTATTGGTATTTAATATCCTTGCTGTCTGGGGTCTTTCAGTTATCTCCGGTGGTAAAAATTCAATTTTTTCCCGGGAACAAAATGCCAGTGCACTCGTACTAGTAGCAAGCCAGAAAACATTACCTGTAATGGTAGCAGTGATAGAGCCACTTCGAGGTGCATTTGGAGAATCTGGGTTACTGGTTCTTCCTTGTGTTGCAGCACATCTCAACCAGATTATTCTTGACACTTTTATCGTTAACTTCTTGCGTCCCCAAGACAATTCCAACAATGTCAAGGTGGCTTAA

>Glyma10g14310.1   sequence type=predicted peptide   gene model=Glyma10g14310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFTLATSSQVLLRLQPPHSMEPMAHSLTLTPFPATASSFRHRHLYAVKALTLRSVTRRLKPALVRACDRSQQMGGNGSKETKGLSWVEPILTFARRNILPLALVSAVTLGLTYPSIGCVADKYGVSKIGPFGIFVISGLMLRSEEIGAAVEAWPVGLFGLVSILFLTPYFSRVILQIQLQPQEFITGLAIFACMPTTLSSGVALTQLAGGNSALALAMTVISNMLGILIIPLSITKFVAAGVGVTLPTKQLFKSLVLTILIPLILGKVLRESFKGVADFVDKNRKLFTVISALFLSLVPWTQVSRSRSLLLMVKPSVFLVAIGLGTLLHLSLLVFNILAVWGLSVISGGKNSIFSREQNASALVLVASQKTLPVMVAVIEPLRGAFGESGLLVLPCVAAHLNQIILDTFIVNFLRPQDNSNNVKVA*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo