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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma10g13950

Feature Type:gene_model
Chromosome:Gm10
Start:15793226
stop:15795419
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G42170AT Annotation by Michelle Graham. TAIR10: BED zinc finger ;hAT family dimerisation domain | chr3:14321838-14323928 FORWARD LENGTH=696 SoyBaseE_val: 3.00E-62ISS
GO:0009791GO-bp Annotation by Michelle Graham. GO Biological Process: post-embryonic development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0046983GO-mf Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity SoyBaseN/AISS
KOG1121 KOG Tam3-transposase (Ac family) JGI ISS
PTHR10775Panther AC-LIKE TRANSPOSASE-RELATED JGI ISS
PTHR10775:SF11Panther AC-LIKE TRANSPOSASE JGI ISS
PF05699PFAM hAT family dimerisation domain JGI ISS
UniRef100_G8A1U0UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein (Fragment) n=1 Tax=Medicago truncatula RepID=G8A1U0_MEDTR SoyBaseE_val: 4.00E-157ISS
UniRef100_Q9S9W0UniRef Annotation by Michelle Graham. Most informative UniRef hit: AT4g05510 protein n=1 Tax=Arabidopsis thaliana RepID=Q9S9W0_ARATH SoyBaseE_val: 8.00E-124ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g13950 not represented in the dataset

Glyma10g13950 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g112300 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma10g13950.1   sequence type=CDS   gene model=Glyma10g13950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGTTGTTGATGGTCAGGAGAGTTTGGATGTTGAGGTTGAATTAGAACAAGAGTCTCAATCTATCTCAATAATTGAACATGATTTACCCATAAAGTTTGTTGAGTTTAGAAACATTAGGCAATGGCTGAAGTACCTCAATCCTGATGTAATTCCAATTAGTAGAAATACTACTAAGGTTGATGTCTTGAAAATTCATATGAGGGAGAAGGAAAAACTTAAGGAACTAATGGTTAGAATCCCAAGTAGGATTTCTTTAACTTATGATTTGTGGACTACATGTACCACCAAGGGTTACATTTGTTTGACTGCTCACTTTATTGACACAAATTGGAGGTTAAATAGCAAAATTTTGAACTTTTGTCACATGCCTCCCCCTCACATTGGACATGAGTTGTCTAAGAAGATACTTGACTTTTTGATTGATTGGGGAACAAAGAAAAAGATTTTTTCATGGGTTGTGCAAGAGCATTTAAAAAGCCAACTTGTTTTGCAAAATAATGGGTTGTTATGTGATGAAGACTTCTTTCATGTTAATTGTTCTACCCATGTTCTTAATCTTATTGTTAAAGAGAGACAGAAAGTGTGTAGTAAAGCCTTGGAAAAAATTAGAGACAGTGTGATATATGTGAGGGGATCGGAGAGTAGAATGAAAAAATTTAAGGAATGCATTGAGAGAGTTGGTGGTGTTGATACTTCAGCTAGCTTGTGTCTAGATGTTCCTACAAGTCTTCACTTTCATGATGAGAATTATACGTATTGTCCATCAGTTGAAGAATGGAAAATAGGAGAAAAGATTTATGTATTTTTGTTGCCTTTCTATGAAACCACCAATCTGATTTTAGAGGAATCTTATCATACCTCCAACTTTTATTTTTTGCAAGTTTCGAAAATTCAATGTGTTATACTTGCAAGTTTGAATGATGATGATGGAGTTTTTGAAAAATATTGGGAGGAGTATAGTGTTGTACCTGCTCTAGGAGCTGTTCTTAACCCACGCATAAAGCTTTCTTTATTGGAATATTGTTACTCCAAAGTTGATGCATCTACAAGTGAGAGTAAGTTGCAAAAAGTAAAGAACAAGTTGTACAAGCTATTTAAGCATTATTCTTTCAAGGAGCAAAATACTACGACCACCCAAGGCACACCTATTTCCAACATTGTGAATGAACCCAAGTCTTCTTTCTCTCAACTGTTGTTTAATCTTGTTTGTAAGATTGGGAAGTCTCAACTAGAAGTTTATTTGGAGGAATCAAATTTGGATTTCAGTTACCATGAAAACTTGGATGTATTACATTGGTGGAAGGATAATAACAATAGATATCCAGATCTGTCCTTAATGGCTAGTGACTTGTTGAGCATTCCAATGACTATTGTTGCATCCAAATCAGCTTTTAGCATTGGTTTTATTGTCCTCGGCAAGTATAGGAGTCGTCTCCTGTCAAAAAATGCAAATGCTTTGATTTGTACTCACAATTGGTTGCTTGATGATGATGGTGACATCAGTGACAAGAAATGGAAGTCATCTTCTAAGGAAACATCCAATGTTTTGGATTTAGAAGATGATGAAGCTTAA

>Glyma10g13950.1   sequence type=predicted peptide   gene model=Glyma10g13950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVVDGQESLDVEVELEQESQSISIIEHDLPIKFVEFRNIRQWLKYLNPDVIPISRNTTKVDVLKIHMREKEKLKELMVRIPSRISLTYDLWTTCTTKGYICLTAHFIDTNWRLNSKILNFCHMPPPHIGHELSKKILDFLIDWGTKKKIFSWVVQEHLKSQLVLQNNGLLCDEDFFHVNCSTHVLNLIVKERQKVCSKALEKIRDSVIYVRGSESRMKKFKECIERVGGVDTSASLCLDVPTSLHFHDENYTYCPSVEEWKIGEKIYVFLLPFYETTNLILEESYHTSNFYFLQVSKIQCVILASLNDDDGVFEKYWEEYSVVPALGAVLNPRIKLSLLEYCYSKVDASTSESKLQKVKNKLYKLFKHYSFKEQNTTTTQGTPISNIVNEPKSSFSQLLFNLVCKIGKSQLEVYLEESNLDFSYHENLDVLHWWKDNNNRYPDLSLMASDLLSIPMTIVASKSAFSIGFIVLGKYRSRLLSKNANALICTHNWLLDDDGDISDKKWKSSSKETSNVLDLEDDEA*







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