Glyma10g13860 - SoyBase

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Report for Sequence Feature Glyma10g13860

Feature Type:	gene_model
Chromosome:	Gm10
Start:	15762541
stop:	15767533
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g13860

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G04670	AT	Annotation by Michelle Graham. TAIR10: Enhancer of polycomb-like transcription factor protein \| chr5:1337998-1340884 REVERSE LENGTH=766	SoyBase	E_val: 6.00E-156	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF10513	PFAM	Enhancer of polycomb-like	JGI		ISS
UniRef100_I1L9Z9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L9Z9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9LZ30	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Enhancer of polycomb-like transcription factor protein n=1 Tax=Arabidopsis thaliana RepID=Q9LZ30_ARATH	SoyBase	E_val: 3.00E-153	ISS

Expression Patterns of Glyma10g13860

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g13860 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g112500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g13860

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g13860

Limit To All Plant Sequences

>Glyma10g13860.3   sequence type=transcript   gene model=Glyma10g13860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTTTTCACCATCACTGACAAATCCTTACGTGTCCTCAAAATATCCACCCTATCCCTCTTTCTTTCTAGTCTTCTTGAGCAACAAGAAAAAACCCTCTTTGGAGGGAGCCGCATCGTTCTACGAGCCCAACAAATCCCAACCCTCCATCCCACCAATCCAACGGCTCCCATCACTCGGCAAAACTCTCTCTTTCTTTCTCTCTCTTCCCCTTTCCCCTTCTTCCCGTCAGCGGTTTTAATCATAAACCCTAGCCGAAACAGTGACACCCACTCCCTTCACTCTCTCTCTATTTCTTTCTCTTTCTCTCTCTCTTCTCAGCGCGCGCTCTTTTCTCTTCTCTCTCCTAATATCACAGATCTCGTTCTCGCCAACGATTCACTACCGAAATTTCTCGTTTTGTTCCGTTCAAGGTTTTAATTTTTCAGAAACCCCTTTCCCCCTCTTCCTTCCTTCTTTTTTTGATTTTTTTTTTGTTTATGGGTTTTTAATTTGTAATAATAGGACAGGATCGATGTTCGATAAATTTGATTCTCTCCACACCATGGTGTTTTTCTTTCCTTAGCCACCCACAAGAAAGAAAAAAACGATTGGGTTTTGGTTTGGTTCGGTTCGGCTTTTTTAAGTGGTTATCGTACGGCAATGCCGGCCGCGGGGATGCGGCGCACGACGAGGGTGTTCGGGATGAAGGGGGCCGAGACGGCCCGCGTTTTACGGTCCGGGCGGCGCCTCTGGCCGGACTCCGGCGAGGTCAAGACCAAGCGATCCCACGACGGGGACCAGTGGCCGATGGCGCCGCCGTCGAAAGCCGCGAAAATCGACGCCGCGGCGACGCCGCGTAAGGGGAAGCGCTGCGAGGAGGCTGCTGCTGCTGTGGTTGACAGGAGGTTCGGCAAGGGCCTTGTGTATCAGAGGAGGAGGAAGGGTTTGTTGAAAAAGGAAGGTTCTAGAAGGAACGGGGAGGTTTTGCGCTGCGTGATTTCGGTTGTTGTGAGTCGCTGTGCAGGGAAAAGTGGAAGGTTTTTGAGGTTGTTAGCATCGGTGGTGAGGTATGTTACTAGGGTTAGGGTTTCTCCGAGGAAGCTGTCGGGGTTCTGTATGTCGGAGGCGATTCATGGGGCTTTTGCGTCGCAAGGGATGCAGTTTGTAAAGGGTCCTACGGTTGTAAACACTGGAATATGCCAGTTCTTTGGGGTCACAGGGACTGTGCCCGCATTTTCTGTGGACTTTTCTGCTGTTTCTCCTTGTTTTGAGTATCTGCAGTATGCGATGTTCTTAAAATCTATGTTTAGGTCATTTTTTCTTGTACATAATCCAATAAATGTGCCTAGTGATGAGGATATCGAGTCAGATGATGATTTGCTGGAATACCAGAATGAACAGCAGATTTCAAGTGATACCTTTAAGAGGGAACCTTCTGAGATTGTAACTGTTACATCTGATGTTATTGAAATCAATGATAAGCAATCTTTACATTCTTCAGTCAAGGTTACCACCAGGGCAGCTGGTCGGAATGGACAATATAAAAACATGTTGAACTCTAGAGGCATTCAGAAGAGGAGAAGTTCTCTTAGGAAAAGGAAAGCTCGTAGTCCTTCTATGGTGAGTTTACGCAGAAATGGAGCAGTAGCTTCTGATTTAACAGGTGGTAGGAAAAGCAATTGCCAGTTGTCTGTTGTGACCTCTAGCAGAAAACTTAGGAGTATGGCTAATGGTAGCCCCACTGGGAGCCTGAAAGAAGCTAGTTCTGCCATAGTGGATTCGAAAGAGCGACTAGGTTCATCTTCCTGTTATGCAAACTTGTTGGTATCAGAGATAGACCAATGCTGCAGGTTAGAGGGAGCAATTGTTACTTTAGAGTGGTCTTCTCCAAAAGAATGGCTTTTCACTGTAAAGAAAGATGGATTAACAAGATGCACATTCAGAGCAGAAAAAGTGATGCGGCCCTTTTCAACAAATCGATTCACCCATGCAGTAGTGTATTCATTGGACAATGGGTGGAAGCTGGAGTTTACCAATCGCCAAGACTGGAATGTCTTTAAAGACCTTTATAAGAAGTGTTCTGATCGTAATATCCCTGCTACTGCTGCCAAAGTTATCCCAGTTCCAGGTGTACGTGAGGTCTCTTCCTATGCAGAAAGTAACTGTTTTCCCTATCACAGACCAGATACATACATATCTGCCTCTGGTGATGAGTTAACTAGAGTAATGACAAGGGCAACTGCAAATTATGACATGGATTCTGAAGATGAGGAATGGCTGAAAAAGTTCAATGAGTTTCAAGAACATGTGTCAGAGGATAATTTTGAGTTAATTATTGATGCTTTGGAGAAGGTTTATTATTATAATCCAGATGATTCATTTGATGAAAAATCTGCAGCCAATGGTTGTCAGGACCTTGGTAGCAAGGAAGTGGTAGAAGCTGTATATAACTATTGGATGAGAAAGCGAAAGCTAAAACGGTCTTTCCTGCTTAGGGTTTTCCAGGGTCATCAATCAAAGAGAGCTCCACTTATCCCTAAGCCCTTGCTGCGAAAAAGGAGGTCATTTAAGAGACAACCTAGTCAGTTTAGTAGAGGCAATCAACCAAGTGTGTTGAAAGCATTTGCAGCTGAACAAGATGCCATGGAAGAAAATGCAATGCTCAAGATTGAAGAAGCCAAGGCCAATGCAAACATGTCCATGGAATTAGCCATAAATAAACGCAAAAGGGCTCAATGTCTTGCTCAGAATGCAGATTTGGCCACCTACAAGGCCACAATGTTAATTAGAATAGCCGAAGCAGCTATGGCTGCAGAATCATTAGATGATGCAGCAGCATATTTTCTTGATTGATTGATGGTTAAATCAATTCCATTGCTAATTATCACACCACAAATTTTTATTACAGGATGGGGGGTCATAATAGATTTGCTGCTGTTTAGTTGTAAAATTGTACAGATTTTTGCTTGTATTTATAACTTGGATTTAAATGATAGGCCTCACCAATCTTTTGTATGAGTAGGTTGGTTGATCCTCCTTGGAAGAAAGAAAACTAAAAAAGTTGAAATGAAAAAGAAAATACAGGATTTCTATGCCTCATGTATTGTTATTCTTATTATTTTGGGGTACGAAGACAAACATTACAAGTAGGCCAAACCGGGCCCAAACAAAAGGCCCACATTAGCTCAAAAGGTAATGCCAAAGGACGATAAGCTTGTGTGCCTCATCAATAGGAGTTGCATTTTTAGGTGCTAACGGACAAAATCACAAAATACCCACATTTGTTGCGGTTAAGCCAATAAGGTTTTTGAATTAAAGCTGTGAAAAGAAGGTTGTACACTTGAACAAACTATGTATGTTTAATGGATTGTTTGGTCTCTTGAAAAGGATGTGTACCACTGAAAAACATTTGAAGGGTCAGTGTAGTGGGTTTATAATGTGAGCTATTTGAGAAGTGTCGTTCTCTCCCTTATTTTTGTGCAG

Coding sequences of Glyma10g13860

Limit To All Plant Sequences

>Glyma10g13860.2   sequence type=CDS   gene model=Glyma10g13860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGGCCGCGGGGATGCGGCGCACGACGAGGGTGTTCGGGATGAAGGGGGCCGAGACGGCCCGCGTTTTACGGTCCGGGCGGCGCCTCTGGCCGGACTCCGGCGAGGTCAAGACCAAGCGATCCCACGACGGGGACCAGTGGCCGATGGCGCCGCCGTCGAAAGCCGCGAAAATCGACGCCGCGGCGACGCCGCGTAAGGGGAAGCGCTGCGAGGAGGCTGCTGCTGCTGTGGTTGACAGGAGGTTCGGCAAGGGCCTTGTGTATCAGAGGAGGAGGAAGGGTTTGTTGAAAAAGGAAGGTTCTAGAAGGAACGGGGAGGTTTTGCGCTGCGTGATTTCGGTTGTTGTGAGTCGCTGTGCAGGGAAAAGTGGAAGGTTTTTGAGGTTGTTAGCATCGGTGGTGAGGTATGTTACTAGGGTTAGGGTTTCTCCGAGGAAGCTGTCGGGGTTCTGTATGTCGGAGGCGATTCATGGGGCTTTTGCGTCGCAAGGGATGCAGTTTGTAAAGGGTCCTACGGTTGTAAACACTGGAATATGCCAGTTCTTTGGGGTCACAGGGACTGTGCCCGCATTTTCTGTGGACTTTTCTGCTGTTTCTCCTTGTTTTGAGTATCTGCAGTATGCGATGTTCTTAAAATCTATGTTTAGGTCATTTTTTCTTGTACATAATCCAATAAATGTGCCTAGTGATGAGGATATCGAGTCAGATGATGATTTGCTGGAATACCAGAATGAACAGCAGATTTCAAGTGATACCTTTAAGAGGGAACCTTCTGAGATTGTAACTGTTACATCTGATGTTATTGAAATCAATGATAAGCAATCTTTACATTCTTCAGTCAAGGTTACCACCAGGGCAGCTGGTCGGAATGGACAATATAAAAACATGTTGAACTCTAGAGGCATTCAGAAGAGGAGAAGTTCTCTTAGGAAAAGGAAAGCTCGTAGTCCTTCTATGGTGAGTTTACGCAGAAATGGAGCAGTAGCTTCTGATTTAACAGGTGGTAGGAAAAGCAATTGCCAGTTGTCTGTTGTGACCTCTAGCAGAAAACTTAGGAGTATGGCTAATGGTAGCCCCACTGGGAGCCTGAAAGAAGCTAGTTCTGCCATAGTGGATTCGAAAGAGCGACTAGGTTCATCTTCCTGTTATGCAAACTTGTTGGTATCAGAGATAGACCAATGCTGCAGGTTAGAGGGAGCAATTGTTACTTTAGAGTGGTCTTCTCCAAAAGAATGGCTTTTCACTGTAAAGAAAGATGGATTAACAAGATGCACATTCAGAGCAGAAAAAGTGATGCGGCCCTTTTCAACAAATCGATTCACCCATGCAGTAGTGTATTCATTGGACAATGGGTGGAAGCTGGAGTTTACCAATCGCCAAGACTGGAATGTCTTTAAAGACCTTTATAAGAAGTGTTCTGATCGTAATATCCCTGCTACTGCTGCCAAAGTTATCCCAGTTCCAGGTGTACGTGAGGTCTCTTCCTATGCAGAAAGTAACTGTTTTCCCTATCACAGACCAGATACATACATATCTGCCTCTGGTGATGAGTTAACTAGAGTAATGACAAGGGCAACTGCAAATTATGACATGGATTCTGAAGATGAGGAATGGCTGAAAAAGTTCAATGAGTTTCAAGAACATGTGTCAGAGGATAATTTTGAGTTAATTATTGATGCTTTGGAGAAGGTTTATTATTATAATCCAGATGATTCATTTGATGAAAAATCTGCAGCCAATGGTTGTCAGGACCTTGGTAGCAAGGAAGTGGTAGAAGCTGTATATAACTATTGGATGAGAAAGCGAAAGCTAAAACGGTCTTTCCTGCTTAGGGTTTTCCAGGGTCATCAATCAAAGAGAGCTCCACTTATCCCTAAGCCCTTGCTGCGAAAAAGGAGGTCATTTAAGAGACAACCTAGTCAGTTTAGTAGAGGCAATCAACCAAGTGTGTTGAAAGCATTTGCAGCTGAACAAGATGCCATGGAAGAAAATGCAATGCTCAAGATTGAAGAAGCCAAGGCCAATGCAAACATGTCCATGGAATTAGCCATAAATAAACGCAAAAGGGCTCAATGTCTTGCTCAGAATGCAGATTTGGCCACCTACAAGGCCACAATGTTAATTAGAATAGCCGAAGCAGCTATGGCTGCAGAATCATTAGATGATGCAGCAGCATATTTTCTTGATTGA

>Glyma10g13860.3   sequence type=CDS   gene model=Glyma10g13860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGGCCGCGGGGATGCGGCGCACGACGAGGGTGTTCGGGATGAAGGGGGCCGAGACGGCCCGCGTTTTACGGTCCGGGCGGCGCCTCTGGCCGGACTCCGGCGAGGTCAAGACCAAGCGATCCCACGACGGGGACCAGTGGCCGATGGCGCCGCCGTCGAAAGCCGCGAAAATCGACGCCGCGGCGACGCCGCGTAAGGGGAAGCGCTGCGAGGAGGCTGCTGCTGCTGTGGTTGACAGGAGGTTCGGCAAGGGCCTTGTGTATCAGAGGAGGAGGAAGGGTTTGTTGAAAAAGGAAGGTTCTAGAAGGAACGGGGAGGTTTTGCGCTGCGTGATTTCGGTTGTTGTGAGTCGCTGTGCAGGGAAAAGTGGAAGGTTTTTGAGGTTGTTAGCATCGGTGGTGAGGTATGTTACTAGGGTTAGGGTTTCTCCGAGGAAGCTGTCGGGGTTCTGTATGTCGGAGGCGATTCATGGGGCTTTTGCGTCGCAAGGGATGCAGTTTGTAAAGGGTCCTACGGTTGTAAACACTGGAATATGCCAGTTCTTTGGGGTCACAGGGACTGTGCCCGCATTTTCTGTGGACTTTTCTGCTGTTTCTCCTTGTTTTGAGTATCTGCAGTATGCGATGTTCTTAAAATCTATGTTTAGGTCATTTTTTCTTGTACATAATCCAATAAATGTGCCTAGTGATGAGGATATCGAGTCAGATGATGATTTGCTGGAATACCAGAATGAACAGCAGATTTCAAGTGATACCTTTAAGAGGGAACCTTCTGAGATTGTAACTGTTACATCTGATGTTATTGAAATCAATGATAAGCAATCTTTACATTCTTCAGTCAAGGTTACCACCAGGGCAGCTGGTCGGAATGGACAATATAAAAACATGTTGAACTCTAGAGGCATTCAGAAGAGGAGAAGTTCTCTTAGGAAAAGGAAAGCTCGTAGTCCTTCTATGGTGAGTTTACGCAGAAATGGAGCAGTAGCTTCTGATTTAACAGGTGGTAGGAAAAGCAATTGCCAGTTGTCTGTTGTGACCTCTAGCAGAAAACTTAGGAGTATGGCTAATGGTAGCCCCACTGGGAGCCTGAAAGAAGCTAGTTCTGCCATAGTGGATTCGAAAGAGCGACTAGGTTCATCTTCCTGTTATGCAAACTTGTTGGTATCAGAGATAGACCAATGCTGCAGGTTAGAGGGAGCAATTGTTACTTTAGAGTGGTCTTCTCCAAAAGAATGGCTTTTCACTGTAAAGAAAGATGGATTAACAAGATGCACATTCAGAGCAGAAAAAGTGATGCGGCCCTTTTCAACAAATCGATTCACCCATGCAGTAGTGTATTCATTGGACAATGGGTGGAAGCTGGAGTTTACCAATCGCCAAGACTGGAATGTCTTTAAAGACCTTTATAAGAAGTGTTCTGATCGTAATATCCCTGCTACTGCTGCCAAAGTTATCCCAGTTCCAGGTGTACGTGAGGTCTCTTCCTATGCAGAAAGTAACTGTTTTCCCTATCACAGACCAGATACATACATATCTGCCTCTGGTGATGAGTTAACTAGAGTAATGACAAGGGCAACTGCAAATTATGACATGGATTCTGAAGATGAGGAATGGCTGAAAAAGTTCAATGAGTTTCAAGAACATGTGTCAGAGGATAATTTTGAGTTAATTATTGATGCTTTGGAGAAGGTTTATTATTATAATCCAGATGATTCATTTGATGAAAAATCTGCAGCCAATGGTTGTCAGGACCTTGGTAGCAAGGAAGTGGTAGAAGCTGTATATAACTATTGGATGAGAAAGCGAAAGCTAAAACGGTCTTTCCTGCTTAGGGTTTTCCAGGGTCATCAATCAAAGAGAGCTCCACTTATCCCTAAGCCCTTGCTGCGAAAAAGGAGGTCATTTAAGAGACAACCTAGTCAGTTTAGTAGAGGCAATCAACCAAGTGTGTTGAAAGCATTTGCAGCTGAACAAGATGCCATGGAAGAAAATGCAATGCTCAAGATTGAAGAAGCCAAGGCCAATGCAAACATGTCCATGGAATTAGCCATAAATAAACGCAAAAGGGCTCAATGTCTTGCTCAGAATGCAGATTTGGCCACCTACAAGGCCACAATGTTAATTAGAATAGCCGAAGCAGCTATGGCTGCAGAATCATTAGATGATGCAGCAGCATATTTTCTTGATTGA

Predicted protein sequences of Glyma10g13860

Limit To All Plant Sequences

>Glyma10g13860.2   sequence type=predicted peptide   gene model=Glyma10g13860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPAAGMRRTTRVFGMKGAETARVLRSGRRLWPDSGEVKTKRSHDGDQWPMAPPSKAAKIDAAATPRKGKRCEEAAAAVVDRRFGKGLVYQRRRKGLLKKEGSRRNGEVLRCVISVVVSRCAGKSGRFLRLLASVVRYVTRVRVSPRKLSGFCMSEAIHGAFASQGMQFVKGPTVVNTGICQFFGVTGTVPAFSVDFSAVSPCFEYLQYAMFLKSMFRSFFLVHNPINVPSDEDIESDDDLLEYQNEQQISSDTFKREPSEIVTVTSDVIEINDKQSLHSSVKVTTRAAGRNGQYKNMLNSRGIQKRRSSLRKRKARSPSMVSLRRNGAVASDLTGGRKSNCQLSVVTSSRKLRSMANGSPTGSLKEASSAIVDSKERLGSSSCYANLLVSEIDQCCRLEGAIVTLEWSSPKEWLFTVKKDGLTRCTFRAEKVMRPFSTNRFTHAVVYSLDNGWKLEFTNRQDWNVFKDLYKKCSDRNIPATAAKVIPVPGVREVSSYAESNCFPYHRPDTYISASGDELTRVMTRATANYDMDSEDEEWLKKFNEFQEHVSEDNFELIIDALEKVYYYNPDDSFDEKSAANGCQDLGSKEVVEAVYNYWMRKRKLKRSFLLRVFQGHQSKRAPLIPKPLLRKRRSFKRQPSQFSRGNQPSVLKAFAAEQDAMEENAMLKIEEAKANANMSMELAINKRKRAQCLAQNADLATYKATMLIRIAEAAMAAESLDDAAAYFLD*

>Glyma10g13860.3   sequence type=predicted peptide   gene model=Glyma10g13860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPAAGMRRTTRVFGMKGAETARVLRSGRRLWPDSGEVKTKRSHDGDQWPMAPPSKAAKIDAAATPRKGKRCEEAAAAVVDRRFGKGLVYQRRRKGLLKKEGSRRNGEVLRCVISVVVSRCAGKSGRFLRLLASVVRYVTRVRVSPRKLSGFCMSEAIHGAFASQGMQFVKGPTVVNTGICQFFGVTGTVPAFSVDFSAVSPCFEYLQYAMFLKSMFRSFFLVHNPINVPSDEDIESDDDLLEYQNEQQISSDTFKREPSEIVTVTSDVIEINDKQSLHSSVKVTTRAAGRNGQYKNMLNSRGIQKRRSSLRKRKARSPSMVSLRRNGAVASDLTGGRKSNCQLSVVTSSRKLRSMANGSPTGSLKEASSAIVDSKERLGSSSCYANLLVSEIDQCCRLEGAIVTLEWSSPKEWLFTVKKDGLTRCTFRAEKVMRPFSTNRFTHAVVYSLDNGWKLEFTNRQDWNVFKDLYKKCSDRNIPATAAKVIPVPGVREVSSYAESNCFPYHRPDTYISASGDELTRVMTRATANYDMDSEDEEWLKKFNEFQEHVSEDNFELIIDALEKVYYYNPDDSFDEKSAANGCQDLGSKEVVEAVYNYWMRKRKLKRSFLLRVFQGHQSKRAPLIPKPLLRKRRSFKRQPSQFSRGNQPSVLKAFAAEQDAMEENAMLKIEEAKANANMSMELAINKRKRAQCLAQNADLATYKATMLIRIAEAAMAAESLDDAAAYFLD*

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