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Report for Sequence Feature Glyma10g13791

Feature Type:gene_model
Chromosome:Gm10
Start:15619247
stop:15622310
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g13791
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G04610AT Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:1325612-1326916 REVERSE LENGTH=434 SoyBaseE_val: 3.00E-133ISS
GO:0015824GO-bp Annotation by Michelle Graham. GO Biological Process: proline transport SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
KOG2352 KOG Predicted spermine/spermidine synthase JGI ISS
PTHR12176Panther UNCHARACTERIZED JGI ISS
PTHR12176:SF9Panther gb def: ebip6594 [anopheles gambiae str. pest] JGI ISS
UniRef100_F0WW71UniRef Annotation by Michelle Graham. Most informative UniRef hit: Methyltransferase putative n=1 Tax=Albugo laibachii Nc14 RepID=F0WW71_9STRA SoyBaseE_val: 8.00E-21ISS
UniRef100_UPI000233D81CUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233D81C related cluster n=1 Tax=unknown RepID=UPI000233D81C SoyBaseE_val: 0ISS

Expression Patterns of Glyma10g13791
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g13791 not represented in the dataset
Glyma10g13791 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g13791 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g113000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g13791
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma10g13791
>Glyma10g13791.2   sequence type=transcript   gene model=Glyma10g13791   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGCAACTTCAGTTGCCACAAAGTTAACCGTACAAACAGTTCGGGCAAAATACAACACCTTATTCAAGAGCAGCAAAACAAAGTGTGATGGCCCTGGATGCATCAACCTTCGAAACCATACCCCCTTCACGCTTCATCGCCTTCACAGTACCTCATCCAACATGTTCCGATTCCACCCTCCGAGTCGCCGTGCTCGACTCGCCGCTCCAACCCACTGACTCACCCCGAGTCAGCGCCATGTTGGTCCCCGAAGGCCGTGAAACCGATTGGATCTTCTCCACCGAATTGGGCCATCTCCAACTCCTCTTCAGCTCCCCTGGAATTTCACGTTTGATTCTCATAGGAACCCTCTTCAAAGAAGGTACTTTAACTCTTCTTCAATCACGTGCTTATCACCGTTCCTTGGAGTGTTCATTGCAGCATCAGGGTTTTGAGGTTTGGTCAAAGCCTCTTCTTTTGGCTTTGTCTCCTAAATCTTTGTTCAAAAGGGGCATTCCTGAGATACCCCTTTTGAGTTATGAGGATAGTTTGGTTTCTAGTGTGGTGGTTCATGAATGTGTTGGGTGTCATGTTGGTGAAATGTTGGTTGAGGATGTTGAAATTGAAAATGAGAGTGATCATGGGAGGGAGTTTAGGAGGAGGTTGAGGTTTAAGAGAATGCCTAATTTGATTCAAACTGAAATTTGTATTATTCCTGAGAGAGATTGTGATGGTGTGTGCATTGGTGGTGATGTGGGGTTTGTGCCTGATCTTAAGGTTTTGGTGCACCCTTACTTGGGGCCTATGGTGGCTGGTCTTGTGTTGAATAGTGAATATGTGGAGGGGCGGATTCGGATGGGGTTTAGGCCGAAGGCTTTGTGCCTTGGGGTTGGAGGTGGGGCTTTGATGACCTTTTTGAGAAATCAATTGGGTTTTGAGGTCATGGGTGTGGATAGTGATAGGGAGGTTTTGAGGGTGGCAAGGAAGTATTTTGGATTGGAAGAATGTGAGTTTGTCCGTGTTGTTGTTGGGGATGCCTTTGAATCGATGAACAAGCTTGTGTGTGGTGGAAAATTGAATGGTCGGAGGAGTTCTTTTGATGATTGTGAGGTTAATGGTTTTGGTGGTCACTTAGTGGTGGAGGATGAGGTCAACTGTAAATTTGACGTTGTTATGGTTGATTTAGATTCGAGCGACGTGAGGAACGGTGTAAGATCTCCGCCGTTGGAATTCATTAGAAAGGATGTTCTTCTTGCTGCTAAATTAGTTCTTTGTGAGTTTGGGATTCTTGCCATTAATGTCATTCCTCCTAGCAGGTCCTTCTACGACAACTTGGTGAGTCATTTTCAGGAAGTTTTTCATGAGCTGTACAAGATAGATGTAGGGAATGGTGAAAATTTTGTTCTTATTGCCACAGCTTCACCTCTGGTGTTTTCAGTTGAGGATTGTGGTAATTCTTTTCTTATGCGACTGAAATCAGTTATTCCGGAAGCATTCATAAATTCCATAACAAAGATATAATGTCTCATTTCTTGAGACAAGTGTAGTGATTTTGAAAGATCGTTTGCTTCCAAATAGATGATGTGTCGGTAATTTTGATACTATGATCCAAAGTGGAGTGTTTCTTTCATGCATGGTGCATCTTTGCCCGTGAAGAGAGTCATCTTTAAGACTACTGACCAAACACTGAAATCACATTCATATCAGCGGCTTTGCATCTTGCTCTGGATCCAATTGCTTTCAGTAAGCTTATGCCATGTCACTCTTTGTTGGTATTGAGGAGCACATCATCAATGGAGAAGCAAGCATCTCAGGTTTCCACTGAAGATTTCCAAAATGGTTTCAAGAGTAGTAAAGTTCATGACATTTTCTTCTTCTTCTTCTTTTATGCTTTTGGGAAAAGTGAATTATTGTAGTAAAGTTCAAGTAGCTTTTCAACTGGCCAATATCATGTGCTGCCAAAAGCTTTATATATATATATATATAAAATAGAAGTATTTCAATTACATTAATTTTATA
Coding sequences of Glyma10g13791
>Glyma10g13791.1   sequence type=CDS   gene model=Glyma10g13791   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCCTGGATGCATCAACCTTCGAAACCATACCCCCTTCACGCTTCATCGCCTTCACAGTACCTCATCCAACATGTTCCGATTCCACCCTCCGAGTCGCCGTGCTCGACTCGCCGCTCCAACCCACTGACTCACCCCGAGTCAGCGCCATGTTGGTCCCCGAAGGCCGTGAAACCGATTGGATCTTCTCCACCGAATTGGGCCATCTCCAACTCCTCTTCAGCTCCCCTGGAATTTCACGTTTGATTCTCATAGGAACCCTCTTCAAAGAAGGTACTTTAACTCTTCTTCAATCACGTGCTTATCACCGTTCCTTGGAGTGTTCATTGCAGCATCAGGGTTTTGAGGTTTGGTCAAAGCCTCTTCTTTTGGCTTTGTCTCCTAAATCTTTGTTCAAAAGGGGCATTCCTGAGATACCCCTTTTGAGTTATGAGGATAGTTTGGTTTCTAGTGTGGTGGTTCATGAATGTGTTGGGTGTCATGTTGGTGAAATGTTGGTTGAGGATGTTGAAATTGAAAATGAGAGTGATCATGGGAGGGAGTTTAGGAGGAGGTTGAGGTTTAAGAGAATGCCTAATTTGATTCAAACTGAAATTTGTATTATTCCTGAGAGAGATTGTGATGGTGTGTGCATTGGTGGTGATGTGGGGTTTGTGCCTGATCTTAAGGTTTTGGTGCACCCTTACTTGGGGCCTATGGTGGCTGGTCTTGTGTTGAATAGTGAATATGTGGAGGGGCGGATTCGGATGGGGTTTAGGCCGAAGGCTTTGTGCCTTGGGGTTGGAGGTGGGGCTTTGATGACCTTTTTGAGAAATCAATTGGGTTTTGAGGTCATGGGTGTGGATAGTGATAGGGAGGTTTTGAGGGTGGCAAGGAAGTATTTTGGATTGGAAGAATGTGAGTTTGTCCGTGTTGTTGTTGGGGATGCCTTTGAATCGATGAACAAGCTTGTGTGTGGTGGAAAATTGAATGGTCGGAGGAGTTCTTTTGATGATTGTGAGGTTAATGGTTTTGGTGGTCACTTAGTGGTGGAGGATGAGGTCAACTGTAAATTTGACGTTGTTATGGTTGATTTAGATTCGAGCGACGTGAGGAACGGTGTAAGATCTCCGCCGTTGGAATTCATTAGAAAGGATGTTCTTCTTGCTGCTAAATTAGTTCTTTGTGAGTTTGGGATTCTTGCCATTAATGTCATTCCTCCTAGCAGGTCCTTCTACGACAACTTGGTGAGTCATTTTCAGGAAGTTTTTCATGAGCTGTACAAGATAGATGTAGGGAATGGTGAAAATTTTGTTCTTATTGCCACAGCTTCACCTCTGGTGTTTTCAGTTGAGGATTGTGGTAATTCTTTTCTTATGCGACTGAAATCAGTTATTCCGGAAGCATTCATAAATTCCATAACAAAGATATAA

>Glyma10g13791.2   sequence type=CDS   gene model=Glyma10g13791   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCCTGGATGCATCAACCTTCGAAACCATACCCCCTTCACGCTTCATCGCCTTCACAGTACCTCATCCAACATGTTCCGATTCCACCCTCCGAGTCGCCGTGCTCGACTCGCCGCTCCAACCCACTGACTCACCCCGAGTCAGCGCCATGTTGGTCCCCGAAGGCCGTGAAACCGATTGGATCTTCTCCACCGAATTGGGCCATCTCCAACTCCTCTTCAGCTCCCCTGGAATTTCACGTTTGATTCTCATAGGAACCCTCTTCAAAGAAGGTACTTTAACTCTTCTTCAATCACGTGCTTATCACCGTTCCTTGGAGTGTTCATTGCAGCATCAGGGTTTTGAGGTTTGGTCAAAGCCTCTTCTTTTGGCTTTGTCTCCTAAATCTTTGTTCAAAAGGGGCATTCCTGAGATACCCCTTTTGAGTTATGAGGATAGTTTGGTTTCTAGTGTGGTGGTTCATGAATGTGTTGGGTGTCATGTTGGTGAAATGTTGGTTGAGGATGTTGAAATTGAAAATGAGAGTGATCATGGGAGGGAGTTTAGGAGGAGGTTGAGGTTTAAGAGAATGCCTAATTTGATTCAAACTGAAATTTGTATTATTCCTGAGAGAGATTGTGATGGTGTGTGCATTGGTGGTGATGTGGGGTTTGTGCCTGATCTTAAGGTTTTGGTGCACCCTTACTTGGGGCCTATGGTGGCTGGTCTTGTGTTGAATAGTGAATATGTGGAGGGGCGGATTCGGATGGGGTTTAGGCCGAAGGCTTTGTGCCTTGGGGTTGGAGGTGGGGCTTTGATGACCTTTTTGAGAAATCAATTGGGTTTTGAGGTCATGGGTGTGGATAGTGATAGGGAGGTTTTGAGGGTGGCAAGGAAGTATTTTGGATTGGAAGAATGTGAGTTTGTCCGTGTTGTTGTTGGGGATGCCTTTGAATCGATGAACAAGCTTGTGTGTGGTGGAAAATTGAATGGTCGGAGGAGTTCTTTTGATGATTGTGAGGTTAATGGTTTTGGTGGTCACTTAGTGGTGGAGGATGAGGTCAACTGTAAATTTGACGTTGTTATGGTTGATTTAGATTCGAGCGACGTGAGGAACGGTGTAAGATCTCCGCCGTTGGAATTCATTAGAAAGGATGTTCTTCTTGCTGCTAAATTAGTTCTTTGTGAGTTTGGGATTCTTGCCATTAATGTCATTCCTCCTAGCAGGTCCTTCTACGACAACTTGGTGAGTCATTTTCAGGAAGTTTTTCATGAGCTGTACAAGATAGATGTAGGGAATGGTGAAAATTTTGTTCTTATTGCCACAGCTTCACCTCTGGTGTTTTCAGTTGAGGATTGTGGTAATTCTTTTCTTATGCGACTGAAATCAGTTATTCCGGAAGCATTCATAAATTCCATAACAAAGATATAA
Predicted protein sequences of Glyma10g13791
>Glyma10g13791.1   sequence type=predicted peptide   gene model=Glyma10g13791   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALDASTFETIPPSRFIAFTVPHPTCSDSTLRVAVLDSPLQPTDSPRVSAMLVPEGRETDWIFSTELGHLQLLFSSPGISRLILIGTLFKEGTLTLLQSRAYHRSLECSLQHQGFEVWSKPLLLALSPKSLFKRGIPEIPLLSYEDSLVSSVVVHECVGCHVGEMLVEDVEIENESDHGREFRRRLRFKRMPNLIQTEICIIPERDCDGVCIGGDVGFVPDLKVLVHPYLGPMVAGLVLNSEYVEGRIRMGFRPKALCLGVGGGALMTFLRNQLGFEVMGVDSDREVLRVARKYFGLEECEFVRVVVGDAFESMNKLVCGGKLNGRRSSFDDCEVNGFGGHLVVEDEVNCKFDVVMVDLDSSDVRNGVRSPPLEFIRKDVLLAAKLVLCEFGILAINVIPPSRSFYDNLVSHFQEVFHELYKIDVGNGENFVLIATASPLVFSVEDCGNSFLMRLKSVIPEAFINSITKI*

>Glyma10g13791.2   sequence type=predicted peptide   gene model=Glyma10g13791   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALDASTFETIPPSRFIAFTVPHPTCSDSTLRVAVLDSPLQPTDSPRVSAMLVPEGRETDWIFSTELGHLQLLFSSPGISRLILIGTLFKEGTLTLLQSRAYHRSLECSLQHQGFEVWSKPLLLALSPKSLFKRGIPEIPLLSYEDSLVSSVVVHECVGCHVGEMLVEDVEIENESDHGREFRRRLRFKRMPNLIQTEICIIPERDCDGVCIGGDVGFVPDLKVLVHPYLGPMVAGLVLNSEYVEGRIRMGFRPKALCLGVGGGALMTFLRNQLGFEVMGVDSDREVLRVARKYFGLEECEFVRVVVGDAFESMNKLVCGGKLNGRRSSFDDCEVNGFGGHLVVEDEVNCKFDVVMVDLDSSDVRNGVRSPPLEFIRKDVLLAAKLVLCEFGILAINVIPPSRSFYDNLVSHFQEVFHELYKIDVGNGENFVLIATASPLVFSVEDCGNSFLMRLKSVIPEAFINSITKI*






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