Glyma10g13221 - SoyBase

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Report for Sequence Feature Glyma10g13221

Feature Type:	gene_model
Chromosome:	Gm10
Start:	14923214
stop:	14928024
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g13221

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G72550	AT	Annotation by Michelle Graham. TAIR10: tRNA synthetase beta subunit family protein \| chr1:27319999-27323908 REVERSE LENGTH=584	SoyBase	E_val: 4.00E-33	ISS
GO:0006432	GO-bp	Annotation by Michelle Graham. GO Biological Process: phenylalanyl-tRNA aminoacylation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009328	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: phenylalanine-tRNA ligase complex	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0000287	GO-mf	Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0004826	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phenylalanine-tRNA ligase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
PTHR10947	Panther	PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
PF01486	PFAM	K-box region	JGI		ISS
UniRef100_B9SAX6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phenylalanyl-tRNA synthetase beta chain, putative n=1 Tax=Ricinus communis RepID=B9SAX6_RICCO	SoyBase	E_val: 6.00E-34	ISS
UniRef100_I1L9Y8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L9Y8_SOYBN	SoyBase	E_val: 8.00E-60	ISS

Expression Patterns of Glyma10g13221

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g13221 not represented in the dataset	Glyma10g13221 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g13221 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g113400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g13221

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g13221

Limit To All Plant Sequences

>Glyma10g13221.1   sequence type=CDS   gene model=Glyma10g13221   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAGAAAATTTGAAGAAACTGAAAGAGGTGAATAGGAATCTTCGTAAGGAGATTAGGCAGAGAATGGGAGATTGTATGAATGATCTAGGCTTAGAAGATCTCAAGCTCCTTGAGGAAGAAATGGACAAGGCTGCCAAGGTTGTTCGTGAGTGTAAGGCAACGAAATTTAATGATGTTAAATCAAGCAAAGGCTCTCCATACTGGATGGCCCTTGAGGTTTCTAACTTAAAGAACCAAGGTGGTTATGGGCTAGCAGTTGATATATGGAGCTTAGGGTGTACAGTTTTGGAGATGTTGACAAGGCAGCCTCCTTATTCTGAGTTGGAAGGAGTGCTGCCTCCTATAGCACAAAAGCACGTGATTCAACTCATACTTTCTCACGAAAGAAACTTCAGGGCTGATGAGCTAATGGAGTTCTACAAACCATCACTTTGGAGACAGAATATATTTATTGAATGTACTGCAACTGATCTGACAAAAGTGAAAGTTGTTTTGAATACAATGGTAATAGCCTTCTCAGAATATTGTGAAAACAAATTTGTCATTGAACCAGTTGAAGTTATTTTTTCTGATGGTAACTCAAACATATACCCTGATTTATCTGTCTACAATATGGAAGTTTCTCTATCTTACATTACTGGATTGATTGGGGTATCATTGGAAGCAGAAGAGGTAATTATTTTGCTGCTTCATATGAGTGGCGTGATCCTGCACTTGCAAATTGACTATTGA

Predicted protein sequences of Glyma10g13221

Limit To All Plant Sequences

>Glyma10g13221.1   sequence type=predicted peptide   gene model=Glyma10g13221   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQENLKKLKEVNRNLRKEIRQRMGDCMNDLGLEDLKLLEEEMDKAAKVVRECKATKFNDVKSSKGSPYWMALEVSNLKNQGGYGLAVDIWSLGCTVLEMLTRQPPYSELEGVLPPIAQKHVIQLILSHERNFRADELMEFYKPSLWRQNIFIECTATDLTKVKVVLNTMVIAFSEYCENKFVIEPVEVIFSDGNSNIYPDLSVYNMEVSLSYITGLIGVSLEAEEVIILLLHMSGVILHLQIDY*

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