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Report for Sequence Feature Glyma10g12940

Feature Type:gene_model
Chromosome:Gm10
Start:14611122
stop:14611836
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g12940
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G32090AT Annotation by Michelle Graham. TAIR10: Beta-1,3-N-Acetylglucosaminyltransferase family protein | chr4:15509990-15510820 REVERSE LENGTH=124 SoyBaseE_val: 2.00E-29ISS
GO:0006486GO-bp Annotation by Michelle Graham. GO Biological Process: protein glycosylation SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0008378GO-mf Annotation by Michelle Graham. GO Molecular Function: galactosyltransferase activity SoyBaseN/AISS
PTHR11214Panther BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE JGI ISS
PTHR11214:SF61Panther GALACTOSYLTRANSFERASE JGI ISS
UniRef100_I1L9Y5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L9Y5_SOYBN SoyBaseE_val: 9.00E-81ISS
UniRef100_O49383UniRef Annotation by Michelle Graham. Most informative UniRef hit: Beta-1,3-N-Acetylglucosaminyltransferase family protein n=1 Tax=Arabidopsis thaliana RepID=O49383_ARATH SoyBaseE_val: 1.00E-26ISS

Expression Patterns of Glyma10g12940
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g12940 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g114100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g12940
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g12940
>Glyma10g12940.1   sequence type=CDS   gene model=Glyma10g12940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCAACCTTCAAGTACCTTTTTCCCATCCTCTTCCTTACCCTTATAGTCAAAGGGTCTTGTGAGTGTTCCATAAACAACATCAATATTGGCACTACAAGAAGTGGGAGAGTAATACAAGGCCAACCTGAGTGGAACGTAGTTGTGATCAACAACTGCACTTGTACACAAAGCCAGATAAGGTTGTCTTGCAAAGGGTTTAAGACTTCAGAGAGTGTTAGCCCATCAATTCTTTCCATAGAAGGTGACAGCTGCCTCCTTATCAATGGCAATCCTTTGAATAGTTTTGCTACTGTTCGCTTCTCCTATGCTTGGGATCCTCCTTTCCTCTTATTGCCTACAAGCTCTAGTATAAGTTGTTAA
Predicted protein sequences of Glyma10g12940
>Glyma10g12940.1   sequence type=predicted peptide   gene model=Glyma10g12940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAATFKYLFPILFLTLIVKGSCECSINNINIGTTRSGRVIQGQPEWNVVVINNCTCTQSQIRLSCKGFKTSESVSPSILSIEGDSCLLINGNPLNSFATVRFSYAWDPPFLLLPTSSSISC*






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