Glyma10g12410 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma10g12410

Feature Type:	gene_model
Chromosome:	Gm10
Start:	13396236
stop:	13402857
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g12410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G57680	AT	Annotation by Michelle Graham. TAIR10: Peptidase S41 family protein \| chr3:21381054-21383629 FORWARD LENGTH=519	SoyBase	E_val: 0	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0015996	GO-bp	Annotation by Michelle Graham. GO Biological Process: chlorophyll catabolic process	SoyBase	N/A	ISS
GO:0035556	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0009543	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid lumen	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0008236	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type peptidase activity	SoyBase	N/A	ISS
PTHR22939	Panther	SERINE PROTEASE FAMILY S1C HTRA-RELATED	JGI		ISS
PTHR22939:SF50	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00595	PFAM	PDZ domain (Also known as DHR or GLGF)	JGI		ISS
PF03572	PFAM	Peptidase family S41	JGI		ISS
UniRef100_F4J3G5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peptidase S41 family protein n=1 Tax=Arabidopsis thaliana RepID=F4J3G5_ARATH	SoyBase	E_val: 0	ISS
UniRef100_I1L9W8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L9W8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g12410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g12410

Paralog	Evidence	Comments
Glyma02g31156	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g12410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g094900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g12410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g12410

Limit To All Plant Sequences

>Glyma10g12410.1   sequence type=CDS   gene model=Glyma10g12410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAATCTTTGTCAGAATTTTGATGTTAGAGCCACGATTCCGGTTAAAATAGGAAAAAAATCGACTTGGGATGTTTTGTTTCCTCGTAGGTTGTGGTTGCCGACGTGGACGTGTGATCAGAGGAAGGAGGGGAAGTTGAACTTAAAGGTGCAGTGCGGTACTAGGAAAGAAGGGTGGGTTGAATCTGCGGGAAAAAGCGCGTTTGGGTTTGGCGTTTCGGCCGCGGTTTTGTTCTCTGTGTTCTGCTACTCGCCCGCGGCGCTTGCAGAGTCCCTCACCGTTGCTTTTCCCGTGTCTCGGGCGCCTGAGGTAAATGCAGTTCAAAGAACTCTTGTGGAAGCATGGGGTTTAATTCGAGAAACATTTGTTGATCCTACATTTAATCATCAAGATTGGGATTTGAAGTTGCAGCAAACAATGGTGGAAATGTTTCCCCTGAACTCAGCTGATGCAGCATACACAAAACTCCGTGGAATGCTTTCTACCCTTGGAGATCCTTTCACTCGAATTATCAGCCCAAAGGAATACCAAGGGTTTAAAATTGGAAGTGATGGGAACGTACAAGGAGTGGGATTGTTCATAAATGTTGAACCAAGAACAGGACATTTGGTTGTCTTGTCATGTGTAGATGGCAGTCCAGCTGCTCGTGCTGGTATACATCAAGGGGATGAATTGATTGAGATAAATGGTGAGAGGCTTGATGGCATTGATAGTGAAACTGCAGCACAAAGGCTTAGAGGGAATGCTGGAACAACTGTTACAGTAAAGGTCAAAGACTCAGGAACAAGATCTTTTATCCGAGAGGTCAAACTTCCTAGGGAGTATATTAAGCTCTCTCCAATATCAAGTGCCATCATCCCTCATAGATCCCCAGATGGTCATTTCACAAAAACTGGCTATGTGAAATTGTCAGCCTTCTCTCAGACTGCTGCTGAAGACATGAGGAATGCCATTCAGGAATTGGAAAATCAAGGAGTACACTCGTACATATTAGATCTACGGAACAATCCTGGTGGTTTGGTAAAAGCCGGCCTTGATGTTGCACAGATGTGGTTAGATGGAAATGAGACTCTAGTGAACACAATCGATAGAGATGGGAACATGCTACCCATTAATATGGTCGATGGACATGCTATAACACATGATCCACTTGTGGTGATTGTCAATGAGGGAAGCGCAAGTGCCAGTGAGATTTTAGCCGGGGCATTACATGATAACGGTCGAGCTATTCTTGTGGGGCACAAAACATTTGGTAAAGGAAAGATTCAGAGTGTCACTCAGCTTCATGATGGGTCAGCACTCTTTGTTACAGTGGCAAAATATCTATCACCAGCCCTTCATGACATAGATCAGGTTGGGATAACACCAGATGTGCAATGCACAACAGAAATGCTCAATTCAACCAAGGATATTTCAAATTCAACCAAAGACAAGGCCTCAGTCTCATCTCTGGAAGCAGATTCATGCATAATGGTAGCAGAACATGAGTTGGATTTGGAGGAGTCCATGGGAACTGCTTCTTGA

Predicted protein sequences of Glyma10g12410

Limit To All Plant Sequences

>Glyma10g12410.1   sequence type=predicted peptide   gene model=Glyma10g12410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKNLCQNFDVRATIPVKIGKKSTWDVLFPRRLWLPTWTCDQRKEGKLNLKVQCGTRKEGWVESAGKSAFGFGVSAAVLFSVFCYSPAALAESLTVAFPVSRAPEVNAVQRTLVEAWGLIRETFVDPTFNHQDWDLKLQQTMVEMFPLNSADAAYTKLRGMLSTLGDPFTRIISPKEYQGFKIGSDGNVQGVGLFINVEPRTGHLVVLSCVDGSPAARAGIHQGDELIEINGERLDGIDSETAAQRLRGNAGTTVTVKVKDSGTRSFIREVKLPREYIKLSPISSAIIPHRSPDGHFTKTGYVKLSAFSQTAAEDMRNAIQELENQGVHSYILDLRNNPGGLVKAGLDVAQMWLDGNETLVNTIDRDGNMLPINMVDGHAITHDPLVVIVNEGSASASEILAGALHDNGRAILVGHKTFGKGKIQSVTQLHDGSALFVTVAKYLSPALHDIDQVGITPDVQCTTEMLNSTKDISNSTKDKASVSSLEADSCIMVAEHELDLEESMGTAS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain