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Report for Sequence Feature Glyma10g12190

Feature Type:gene_model
Chromosome:Gm10
Start:13067709
stop:13074591
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g12190
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G12180AT Annotation by Michelle Graham. TAIR10: Cornichon family protein | chr3:3883464-3884570 FORWARD LENGTH=146 SoyBaseE_val: 4.00E-43ISS
GO:0006891GO-bp Annotation by Michelle Graham. GO Biological Process: intra-Golgi vesicle-mediated transport SoyBaseN/AISS
GO:0035556GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG2729 KOG ER vesicle integral membrane protein involved in establishing cell polarity, signaling and protein degradation JGI ISS
PTHR12290Panther CORNICHON JGI ISS
PTHR12290:SF5Panther CORNICHON-RELATED JGI ISS
PF03311PFAM Cornichon protein JGI ISS
UniRef100_A2Q3F1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cornichon n=1 Tax=Medicago truncatula RepID=A2Q3F1_MEDTR SoyBaseE_val: 4.00E-65ISS
UniRef100_C6T1F4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T1F4_SOYBN SoyBaseE_val: 2.00E-87ISS

Expression Patterns of Glyma10g12190
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g12190 not represented in the dataset
Glyma10g12190 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g12190
ParalogEvidenceComments
Glyma02g29587 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g12190 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g093400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g12190
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma10g12190
>Glyma10g12190.2   sequence type=transcript   gene model=Glyma10g12190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAAGGATCCGTGAAAATATTCATGTAGTCGAACTCCCCAGTTTACTCTGTTCCCAACTCATCACTCTCACAACAACATAATCCCCAGTTTTTGAAATTTCAAATCGGTTGGGTTCGGTTTCCAACTTACCCTTCACAAAACCCTACTTTGCTCCGCTCCCTCTCTTCTCGTCACTCAGTAAGTAAATGGGTTGGAATCTCCTCTTCTGGCTCGCCATTTGTTTCCCTTCCAATATTGCCCTTCTCGCATCCACTTTCTACCAGGTTTTGATTCTATCTGATTTGGAATCTGATTACATCAACCCGTTCGACGCGGCATCGCGGATTAACTACTTCGTCCTCCCGGAGTTCGTTGGGCAGGGTGCACTGTGTGCCCTCTGCCTCTTCACTGGCCACTGGTTCATGTTTTTGCTCACTGTTCCTGTTACTTGCTATCATCTCAGGCTGCTTACATTAACCGCCGTCTACTATTTAGGCATCGAAGACGATGAAGACATAGGAAACCTTTGGTAACCCACAACATTTGCAATATGACACTCTGGGTAAGTTGCACCCTTTATTTAGTTGCTGGGAGGGCCCCCTTTTTGGTGGGAATTTGTGACTTAATCTGTACCATTAGTTGTACACTTATAATTCAGGTGTTCGCAGAAATAGAAATGTTAGTCATTAATTTGAATGAAAGATTGCAAACTTGTGTATCCCC

>Glyma10g12190.3   sequence type=transcript   gene model=Glyma10g12190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAAGGATCCGTGAAAATATTCATGTAGTCGAACTCCCCAGTTTACTCTGTTCCCAACTCATCACTCTCACAACAACATAATCCCCAGTTTTTGAAATTTCAAATCGGTTGGGTTCGGTTTCCAACTTACCCTTCACAAAACCCTACTTTGCTCCGCTCCCTCTCTTCTCGTCACTCAGTAAGTAAATGGGTTGGAATCTCCTCTTCTGGCTCGCCATTTGTTTCCCTTCCAATATTGCCCTTCTCGCATCCACTTTCTACCAGGTTTTGATTCTATCTGATTTGGAATCTGATTACATCAACCCGTTCGACGCGGCATCGCGGATTAACTACTTCGTCCTCCCGGAGTTCGTTGGGCAGGGTGCACTGTGTGCCCTCTGCCTCTTCACTGGCCACTGGTTCATGTTTTTGCTCACTGTTCCTGTTACTTGCTATCATCTCAGGCTGTATGTGAAAAGAGAGCATCTTATTGATGTTACTGAGGTGTTTAGGGTACTTAATGCCGAGAAGAAATATCGGATAGCCAAACTTGCTTTATACTTAACAGTTCTCATTGTTACTATCTTCAGGATTCTTGCTGCAGGAAGAGTAATACTCTACAGTTCCAAGTTTGAAGAATTAGACATTCGGTTGAATCCTATAGGGTTCTAGGAAAATTTTGTAATCCTCCTGAAACATGCAATCTACACTGTTCTTTAGTAGATTATCTCATTAGGAAATTAATCATTTCAGATGCCATGGTTTTAGTCTTATAGAGATTCTTAGAATCCTGTAATTACAATTTCTTGACAAGCCCCTCCGATATTTTTTTCCTCTCTAACTCTAATTCCTTTGGTCTCCAATATTGATTTAAATGAGTGAAGTTTTGTCAAGTGACCTTGATTCATTGATATTAAGTTTGGAAATTTTAATTGTTTTTGTGTCATTCTTACACATAAGCTTACACATATGAGAATGCTTGGGTTCCTTGTCTACATGCATTATGTGACCTAAATAAATCTTCAAA
Coding sequences of Glyma10g12190
>Glyma10g12190.1   sequence type=CDS   gene model=Glyma10g12190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTGGAATCTCCTCTTCTGGCTCGCCATTTGTTTCCCTTCCAATATTGCCCTTCTCGCATCCACTTTCTACCAGGTTTTGATTCTATCTGATTTGGAATCTGATTACATCAACCCGTTCGACGCGGCATCGCGGATTAACTACTTCGTCCTCCCGGAGTTCGTTGGGCAGGGTGCACTGTGTGCCCTCTGCCTCTTCACTGGCCACTGGTTCATGTTTTTGCTCACTGTTCCTGTTACTTGCTATCATCTCAGGCTGTATGTGAAAAGAGAGCATCTTATTGATGTTACTGAGGTGTTTAGGGTACTTAATGCCGAGAAGAAATATCGGATAGCCAAACTTGCTTTATACTTAACAGTTCTCATTGTTACTATCTTCAGGCTTACATTAACCGCCGTCTACTATTTAGGCATCGAAGACGATGAAGACATAGGAAACCTTTGGTAA

>Glyma10g12190.2   sequence type=CDS   gene model=Glyma10g12190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTGGAATCTCCTCTTCTGGCTCGCCATTTGTTTCCCTTCCAATATTGCCCTTCTCGCATCCACTTTCTACCAGGTTTTGATTCTATCTGATTTGGAATCTGATTACATCAACCCGTTCGACGCGGCATCGCGGATTAACTACTTCGTCCTCCCGGAGTTCGTTGGGCAGGGTGCACTGTGTGCCCTCTGCCTCTTCACTGGCCACTGGTTCATGTTTTTGCTCACTGTTCCTGTTACTTGCTATCATCTCAGGCTGCTTACATTAACCGCCGTCTACTATTTAGGCATCGAAGACGATGAAGACATAGGAAACCTTTGGTAA

>Glyma10g12190.3   sequence type=CDS   gene model=Glyma10g12190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTGGAATCTCCTCTTCTGGCTCGCCATTTGTTTCCCTTCCAATATTGCCCTTCTCGCATCCACTTTCTACCAGGTTTTGATTCTATCTGATTTGGAATCTGATTACATCAACCCGTTCGACGCGGCATCGCGGATTAACTACTTCGTCCTCCCGGAGTTCGTTGGGCAGGGTGCACTGTGTGCCCTCTGCCTCTTCACTGGCCACTGGTTCATGTTTTTGCTCACTGTTCCTGTTACTTGCTATCATCTCAGGCTGTATGTGAAAAGAGAGCATCTTATTGATGTTACTGAGGTGTTTAGGGTACTTAATGCCGAGAAGAAATATCGGATAGCCAAACTTGCTTTATACTTAACAGTTCTCATTGTTACTATCTTCAGGATTCTTGCTGCAGGAAGAGTAATACTCTACAGTTCCAAGTTTGAAGAATTAGACATTCGGTTGAATCCTATAGGGTTCTAG
Predicted protein sequences of Glyma10g12190
>Glyma10g12190.1   sequence type=predicted peptide   gene model=Glyma10g12190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGWNLLFWLAICFPSNIALLASTFYQVLILSDLESDYINPFDAASRINYFVLPEFVGQGALCALCLFTGHWFMFLLTVPVTCYHLRLYVKREHLIDVTEVFRVLNAEKKYRIAKLALYLTVLIVTIFRLTLTAVYYLGIEDDEDIGNLW*

>Glyma10g12190.2   sequence type=predicted peptide   gene model=Glyma10g12190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGWNLLFWLAICFPSNIALLASTFYQVLILSDLESDYINPFDAASRINYFVLPEFVGQGALCALCLFTGHWFMFLLTVPVTCYHLRLLTLTAVYYLGIEDDEDIGNLW*

>Glyma10g12190.3   sequence type=predicted peptide   gene model=Glyma10g12190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGWNLLFWLAICFPSNIALLASTFYQVLILSDLESDYINPFDAASRINYFVLPEFVGQGALCALCLFTGHWFMFLLTVPVTCYHLRLYVKREHLIDVTEVFRVLNAEKKYRIAKLALYLTVLIVTIFRILAAGRVILYSSKFEELDIRLNPIGF*






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