SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma10g11985

Feature Type:gene_model
Chromosome:Gm10
Start:12560944
stop:12569564
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g11985
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G06839AT Annotation by Michelle Graham. TAIR10: bZIP transcription factor family protein | chr5:2120911-2126217 FORWARD LENGTH=460 SoyBaseE_val: 0ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0009410GO-bp Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus SoyBaseN/AISS
GO:0030968GO-bp Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005096GO-mf Annotation by Michelle Graham. GO Molecular Function: GTPase activator activity SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
GO:0046983GO-mf Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity SoyBaseN/AISS
PTHR22952Panther CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED JGI ISS
PTHR22952:SF54Panther BZIP FAMILY TRANSCRIPTION FACTOR JGI ISS
PF00170PFAM bZIP transcription factor JGI ISS
UniRef100_Q52MZ2UniRef Annotation by Michelle Graham. Most informative UniRef hit: TGA10 transcription factor n=1 Tax=Nicotiana tabacum RepID=Q52MZ2_TOBAC SoyBaseE_val: 0ISS
UniRef100_UPI000233D69FUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233D69F related cluster n=1 Tax=unknown RepID=UPI000233D69F SoyBaseE_val: 0ISS

Expression Patterns of Glyma10g11985
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g11985 not represented in the dataset
Glyma10g11985 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g11985
ParalogEvidenceComments
Glyma02g30220 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g11985 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g092100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g11985
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g11985
>Glyma10g11985.1   sequence type=CDS   gene model=Glyma10g11985   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTTCTCCATAGCTGTTGATAAATTAGAAGAAGAAGCACAACAACAACAACAAGAGCAAGAGACAAAGTCTTTAGGTTCCTCTTTGAATATCGTCATGGCTTCTTCAAGTGTTAAGAGCAATACCAACTCAACAACTCAACTTGAACCATTCCTCCCACCTTTACATCTTCATCATCAACAACAACCACCACAACATCATTTTCATCATCATCAAATACCAGACCAACAAATCTCTTTTGGGATGATGCCATCTTCCTCATTAGCTTCTATCCCAGGAAATTTCTTAAGCAAAGATTCTGGAGCTTATGATTTGGGGGAATTGGATCAAGCCTTTTTTTTGTATCTTGAAGGTCAGGCTGACCCTTCTAGTGTTCAAGACCAAAAACAGAACTCATCATCAGGAATGAGGCCACCACCAACTCTCAACATTTTCCCATCTCAACCTATGCACGCAGTGCCACCATCCAATTCCAAGGTTAACATGGGATTACCCTCCACACAAACCAGCACTGGCTCAAAGAGACAACCAGAGTCATCCATGGCCAAGCCCAATCCACACACTGAAGCCCCTTCTGCACCTGAGCCACCCAAAGCTGTAAAGCGAGAGGGCAATCGCAAGGGAACAACATCAAGCTCTGAGCAGGAAGCACCCAAAACACCAGATCCTAAGACACTAAGAAGACTTGCTCAGAATAGAGAAGCAGCAAGGAAAAGCAGGCTCAGGAAAAAGGCGTACGTTCAGCAACTAGAGTCAAGTAGGATTAAGCTTAATCAGATAGAACAAGAGTTACAACGTTCTAGAGCTCAAGGCATATTAATGGGCGGAAATACACTTCTGGGTGGGGAGCAAGGCTTTCCTATGGCCATGAGTGGAATTAGCTCAGAGGCTGCAATGTTCGACGTGGAATATGCGAGATGGTTAGAGGAGCACCACCGCATAGTGTGCGAGCTAAGAGCTGCACTCCAAGAACACCTTCATGAGAACGAGCTTCGTTTATATGTGGACAATTGCCTGGCTCACTATGACCAAGTAATGAGCCTTAAGAGCATGGTGGCCAAAATCGACGTATTCCACCTTGTTTTTGGCATGTGGAAGACCCCAGCTGAACGTTGCTTCATGTGGATTGGTGGCTTCAGGCCATCTGAACTCATCAAGATTATTCTGGGTCAAATTGAGCCTCTTACGGAGCAACAAATACTTGGGATATGTGGGTTGCAACAATCTACACAAGAGGCAGAAGAGGCTCTTTCCCAAGGGCTTGATGCTCTTAACCAATCTCTCTCAGAGACTATAACATCGGACTCTTTGTGGTGTCCTCCAAATATGAATAACTACATGGGACAAATGGTTGTGGCAATGAACAAACTCTCCACTCTTGAAAGCTTTGTGAGACAGGCTGATAACCTCAGGCACCAGACAATTCACCGTCTGCACCAACTTCTAACAACACGCCAAGCTGCAAGGTGCTTGGTGGCCATTTCTGAGTACTTCCATCGTCTCAGAGCCCTAAGTTCTTTGTGGTCGACTCATCCTCGCCAAGATCAGTAG
Predicted protein sequences of Glyma10g11985
>Glyma10g11985.1   sequence type=predicted peptide   gene model=Glyma10g11985   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGFSIAVDKLEEEAQQQQQEQETKSLGSSLNIVMASSSVKSNTNSTTQLEPFLPPLHLHHQQQPPQHHFHHHQIPDQQISFGMMPSSSLASIPGNFLSKDSGAYDLGELDQAFFLYLEGQADPSSVQDQKQNSSSGMRPPPTLNIFPSQPMHAVPPSNSKVNMGLPSTQTSTGSKRQPESSMAKPNPHTEAPSAPEPPKAVKREGNRKGTTSSSEQEAPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLNQIEQELQRSRAQGILMGGNTLLGGEQGFPMAMSGISSEAAMFDVEYARWLEEHHRIVCELRAALQEHLHENELRLYVDNCLAHYDQVMSLKSMVAKIDVFHLVFGMWKTPAERCFMWIGGFRPSELIKIILGQIEPLTEQQILGICGLQQSTQEAEEALSQGLDALNQSLSETITSDSLWCPPNMNNYMGQMVVAMNKLSTLESFVRQADNLRHQTIHRLHQLLTTRQAARCLVAISEYFHRLRALSSLWSTHPRQDQ*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo