SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G57910 | AT | Annotation by Michelle Graham. TAIR10: D111/G-patch domain-containing protein | chr3:21442771-21443968 FORWARD LENGTH=265 | SoyBase | E_val: 3.00E-91 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| KOG1994 | KOG | Predicted RNA binding protein, contains G-patch and Zn-finger domains | JGI | ISS | |
| PTHR21032 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF01585 | PFAM | G-patch domain | JGI | ISS | |
| UniRef100_B9T273 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9T273_RICCO | SoyBase | E_val: 2.00E-100 | ISS |
| UniRef100_I1L9T7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L9T7_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma10g11830 not represented in the dataset |
Glyma10g11830 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g30380 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g091300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g11830.1 sequence type=CDS gene model=Glyma10g11830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGTTTTTGGCCATGGACGAATCACCGGCGAACAGAGAGAGCAAAAGCGAGGAAGAAGAAGAAGATGATGGCTACATGGGTGACCTTTCTCAGTTTCTTCCTTCCGATGCTCTCGAACCTGCTAAGTTGTCTTCGTCCAAAAAGATTTCCAGCAAGAAAGATCCTTCAGTCAACTCTTCCAAGAACTGGTTGAAAACTCTTAACTGGCAAGAACGGCGAAAACTTGAAAGAGAAAGGAAGCAACAAGAAGAGGATGAGCAAACATTAGCGAAAGTGGAAGCTCCAATACCACAATCCAACATTGGATTTAAGCTTCTCAAACAGATGGGTTATTCTCCAGGTTCTGCCCTAGGCAAGCAAGGCTCGGGCAGGGCTGAACCAGTGGGGATTGAAATTCGACGGTCACGAGCTGGTGTAGGCTTAGAAGACCCCCACAAGGAGAAGAGGAAAAAGGAGGAAATCATGATGGACAGGAAAAGAAGGAAAGAGGAGGACCTAATGAAAGAATTTGGGTCTAGGCAGAAGTCACAGTGGCAGAGTAGGAGAGTTATAATTAATTACAATAAGGCAAAGGCTGCCCTTGACCAACTGGAGAATAGGGTAATTGTGGAGCCACAAAAGAATGACGATGTTGCAGAGGGTGAAGAAGAAGAAGAGGAAGAAATAACAGAAGAGGACTTGCACGATGTTTTGATGAAACTGAGGGATGAATTTAATTATTGCCTCTTTTGTGGATGCCAATATGAATCGAACCATGCCCTTTTGGCCAACTGCCCTGGAACCAATGAAGATGACCACTAA
>Glyma10g11830.1 sequence type=predicted peptide gene model=Glyma10g11830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLFLAMDESPANRESKSEEEEEDDGYMGDLSQFLPSDALEPAKLSSSKKISSKKDPSVNSSKNWLKTLNWQERRKLERERKQQEEDEQTLAKVEAPIPQSNIGFKLLKQMGYSPGSALGKQGSGRAEPVGIEIRRSRAGVGLEDPHKEKRKKEEIMMDRKRRKEEDLMKEFGSRQKSQWQSRRVIINYNKAKAALDQLENRVIVEPQKNDDVAEGEEEEEEEITEEDLHDVLMKLRDEFNYCLFCGCQYESNHALLANCPGTNEDDH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
