Glyma10g11680 - SoyBase

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Report for Sequence Feature Glyma10g11680

Feature Type:	gene_model
Chromosome:	Gm10
Start:	11896187
stop:	11901510
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g11680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G12290	AT	Annotation by Michelle Graham. TAIR10: Copper amine oxidase family protein \| chr4:7304434-7306973 FORWARD LENGTH=741	SoyBase	E_val: 0	ISS
GO:0009308	GO-bp	Annotation by Michelle Graham. GO Biological Process: amine metabolic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0005507	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper ion binding	SoyBase	N/A	ISS
GO:0008131	GO-mf	Annotation by Michelle Graham. GO Molecular Function: primary amine oxidase activity	SoyBase	N/A	ISS
GO:0048038	GO-mf	Annotation by Michelle Graham. GO Molecular Function: quinone binding	SoyBase	N/A	ISS
KOG1186	KOG	Copper amine oxidase	JGI		ISS
PTHR10638	Panther	COPPER/TOPAQUINONE OXIDASE	JGI		ISS
PTHR10638:SF12	Panther	COPPER AMINE OXIDASE	JGI		ISS
PF01179	PFAM	Copper amine oxidase, enzyme domain	JGI		ISS
PF02727	PFAM	Copper amine oxidase, N2 domain	JGI		ISS
PF02728	PFAM	Copper amine oxidase, N3 domain	JGI		ISS
UniRef100_Q9SW88	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Amine oxidase n=1 Tax=Canavalia lineata RepID=Q9SW88_CANLI	SoyBase	E_val: 0	ISS
UniRef100_UPI000233D661	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D661 related cluster n=1 Tax=unknown RepID=UPI000233D661	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g11680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g11680 not represented in the dataset	Glyma10g11680 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g11680

Paralog	Evidence	Comments
Glyma15g43210	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g11680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g090600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g11680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g11680

Limit To All Plant Sequences

>Glyma10g11680.4   sequence type=transcript   gene model=Glyma10g11680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATACTATTCACACAAACTCTCTCTGACTAGTGATATCTATCCATGGAGGCCAAGAACTTGTGGCGCTTCCTGGTTCTTTCAATCGGTGTGGTACTAGTTTTACTTGTCACTTGGCTGCCCAACAAGGAGGCTCTAGACTGCAACCTTTACTCTGGATGGTGCACCTCAAAGAACCGGTTCTACTCTTCAGCACATCCTAATAATCCGATTAAGAAACCATCATTTTCCACATATCATCATCACAAGAACCAACACCATGAATCCGAGATTCCTCAACACCCTCTTGACCCTCTAACCATCCAAGAGTTCAACAAGGTCCGCACCATCCTTTTGAACTACCCTCTCTTCAAGTCCTCATCCAGCTACACTCTCAACTCCGTTGTCCTTGAAGAGCCAGACAAAAAACTTGTCCTCAAATGGAAAAAGGGTGATCTACCCTTGCCTAGGAAGGCTTCCGTGGTTGCATATGTGAAGGGAGACTCACATGTGCTCACGGTGGACCTCGAAACCGGCCAGGTGGTGAGCCAGGAAGCCATCACCTGGTCGGTCTCAGGTTACCCCACCATGACCCTAGAGGACATGGTGGGAGTACTTGAGGTTCCCCTCAAGAGCACCGAATTCAACCGCTCCATCACTAAACGCGGTGTCAATTTAGCAGACCTGGCATGCTTGCCAATCTCTTCAGGGTGGTATGGGACACAAGTGGAGGAGAATACAAGGTTGATTAAGGTGCAGTGCTATTCCAAAGAAGGCACTGTGAACTTCTACATGAAACCAATTGAGGGTGTGACTGCCTTAGTTGACATGAATAAAAAAGAGGTGCTGTCAATTTCAGATAATGGCCAAAACATCCCTGTGGCCAATGGAATTAACACTGACTACCGTTACTCCATTCAGAAGCTGAATGGAGGAGAGTTGAGGATGCTGAATCCAATATCCTTGGAGCAACCAAAAGGTCCAAGCTTCACAATTAATGGGCACTTGGTGAAATGGGCAAACTGGGAATTTCATCTGAGACCAGACCCAAGAGCTGGGATCATAATTTCACAAGCCAAGGTGAGGGACCCTGACACATCAAAGCTGAGAAGTGTAATGTACAAAGGGTTCACCTCTGAGCTATTTGTGCCATACATGGATCCCACACAAGATTGGTACTTTAAGACATACATGGATGCTGGTGAGTATGGATTTGGGTTGCAGGCAATGCCACTAGACCCCTTGAATGATTGCCCCAAGAATGCTTACTACATGGATGGTGTCTTTGCCTCTTCCGATGGAACACCATATCTCCAACCCAACATGATTTGCATTTTTGAGAGTTATGCTGGTGACATTGCGTGGCGACATGCAGAGTGCCCCATCACTGACCTCAAGGTTACAGAAGTGAGGCCAAAGGTGACACTAGTGGTTAGGATGGCAGCAGCAGTAGCAAACTATGACTATATCGTGGATTGGGAATTTCAAACTGATGGGCTAATCAGAGCAAAGGTTGGACTGAGTGGTATCTTGATGGTGAAAGGAACTACCTATGAGAATATGGATCAAGTTCCCAACCAAGAATATCTTTATGGAACCCTTTTGAGTGAAAACATTATAGGTGTAATCCATGACCACTTTATCACATATTACCTAGATATGGACGTTGATGGCTCTGACAATTCATTTGTTGAGGTAAACATAAAGAAGCAAGAGACCTCTCCAGGAGAATCACCCAGAAAGAGTTATCTAAAAGCTGTTAAAAAAGTGGCAAAGACAGAGAAAGATGCTCAAATAAGACTTCAACTCTATGACCCATCGGAATTTCATGTGGTGAACCCATTGAAGAAGACAAGGATAGGGAACCCTGTTGGGTACAAATTGGTTCCAGGTGCCACAGCAGCTAGCCTGCTGGATCCAGAAGATCCTCCACAGAAAAGAGCAGCTTTTACAAACAATCAAATATGGGTTACTCCTTACAACAAAAGTGAGCAATGGGCTGGTGGTTTATTTGCTTACCAGAGCAAAGGGGATGATACTCTTCAAGTCTGGTCCAACAGACTGCTGATATTTTAATATGCAGGGATCGTCCAATTGAGAATAAAGACATTGTTTTGTGGTACACAATAGGGTTCCATCATATACCCTGTCAAGAGGACTATCCTGTCATGCCTACTGTATCATCAAGTTTTGATTTGAAGCCTGCTAATTTCTTTGAGAGAAATCCAATCCTTGGAGTCCCTCCCAATTTCGAAGATGATTTACCTGTTTGCAAGGCTCGTGATTCAGCTTGAGATCCCATCAGTTGGTTTTTAGTCTAATTAGATACATGCTTTATTTATGCATGTAGCAAATGATGATGCCCAGACTGAACTTTAAACCTAACTTAAAGTAAAGAGGGTCTAGTTCTGTTGATTAAACAGAATGTATAAATATTGTAAAACCTTTTGATACCATGTTTAATTCTTATGTATAAGAAAAATTATGATGTTAAAAATCTAGAAAGTGACTTGAATCAATATAAATAAATTTGTGAATTCAATCACAGTTTGAATATCACATAAACTCACAGTAGATTTCAAAGTTTGGACTTCATCTGTCAATTACATAGTGGTTCAAATAACATAATGTTTCTTAAATACTAGTTGAGTGCAGACCAAATGTTATGGTTCAAAACATGTAATTGATTGACAAAACCAGGAAATAGAACAACACAGCAGCAAAAATCCAAAGGCTAATAACGTTGAATCAAAACAAAGATAAGGAATAGAAGATGAACACGAGCAATTAGGTGGTTCGGTCACAAAGGACCTACATCCACAAGAAAGAAGCGAAACCGATCTTCTATGGTCCAAGAGTTACAAAGATGTATGTGTATAAATAAAATCTTGTTTGGTAATTTCAATGTTGAGATAACAATATCAAGGATCCCCAAGTTTCAACTTTATCTCTCTCACACACTTCGATCTTCCTCTCATTGTGATTACAAGAATGGG

Coding sequences of Glyma10g11680

Limit To All Plant Sequences

>Glyma10g11680.3   sequence type=CDS   gene model=Glyma10g11680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGCCAAGAACTTGTGGCGCTTCCTGGTTCTTTCAATCGGTGTGGTACTAGTTTTACTTGTCACTTGGCTGCCCAACAAGGAGGCTCTAGACTGCAACCTTTACTCTGGATGGTGCACCTCAAAGAACCGGTTCTACTCTTCAGCACATCCTAATAATCCGATTAAGAAACCATCATTTTCCACATATCATCATCACAAGAACCAACACCATGAATCCGAGATTCCTCAACACCCTCTTGACCCTCTAACCATCCAAGAGTTCAACAAGGTCCGCACCATCCTTTTGAACTACCCTCTCTTCAAGTCCTCATCCAGCTACACTCTCAACTCCGTTGTCCTTGAAGAGCCAGACAAAAAACTTGTCCTCAAATGGAAAAAGGGTGATCTACCCTTGCCTAGGAAGGCTTCCGTGGTTGCATATGTGAAGGGAGACTCACATGTGCTCACGGTGGACCTCGAAACCGGCCAGGTGGTGAGCCAGGAAGCCATCACCTGGTCGGTCTCAGGTTACCCCACCATGACCCTAGAGGACATGGTGGGAGTACTTGAGGTTCCCCTCAAGAGCACCGAATTCAACCGCTCCATCACTAAACGCGGTGTCAATTTAGCAGACCTGGCATGCTTGCCAATCTCTTCAGGGTGGTATGGGACACAAGTGGAGGAGAATACAAGGTTGATTAAGGTGCAGTGCTATTCCAAAGAAGGCACTGTGAACTTCTACATGAAACCAATTGAGGGTGTGACTGCCTTAGTTGACATGAATAAAAAAGAGGTGCTGTCAATTTCAGATAATGGCCAAAACATCCCTGTGGCCAATGGAATTAACACTGACTACCGTTACTCCATTCAGAAGCTGAATGGAGGAGAGTTGAGGATGCTGAATCCAATATCCTTGGAGCAACCAAAAGGTCCAAGCTTCACAATTAATGGGCACTTGGTGAAATGGGCAAACTGGGAATTTCATCTGAGACCAGACCCAAGAGCTGGGATCATAATTTCACAAGCCAAGGTGAGGGACCCTGACACATCAAAGCTGAGAAGTGTAATGTACAAAGGGTTCACCTCTGAGCTATTTGTGCCATACATGGATCCCACACAAGATTGGTACTTTAAGACATACATGGATGCTGGTGAGTATGGATTTGGGTTGCAGGCAATGCCACTAGACCCCTTGAATGATTGCCCCAAGAATGCTTACTACATGGATGGTGTCTTTGCCTCTTCCGATGGAACACCATATCTCCAACCCAACATGATTTGCATTTTTGAGAGTTATGCTGGTGACATTGCGTGGCGACATGCAGAGTGCCCCATCACTGACCTCAAGGTTACAGAAGTGAGGCCAAAGGTGACACTAGTGGTTAGGATGGCAGCAGCAGTAGCAAACTATGACTATATCGTGGATTGGGAATTTCAAACTGATGGGCTAATCAGAGCAAAGGTTGGACTGAGTGGTATCTTGATGGTGAAAGGAACTACCTATGAGAATATGGATCAAGTTCCCAACCAAGAATATCTTTATGGAACCCTTTTGAGTGAAAACATTATAGGTGTAATCCATGACCACTTTATCACATATTACCTAGATATGGACGTTGATGGCTCTGACAATTCATTTGTTGAGGTAAACATAAAGAAGCAAGAGACCTCTCCAGGAGAATCACCCAGAAAGAGTTATCTAAAAGCTGTTAAAAAAGTGGCAAAGACAGAGAAAGATGCTCAAATAAGACTTCAACTCTATGACCCATCGGAATTTCATGTGGTGAACCCATTGAAGAAGACAAGGATAGGGAACCCTGTTGGGTACAAATTGGTTCCAGGTGCCACAGCAGCTAGCCTGCTGGATCCAGAAGATCCTCCACAGAAAAGAGCAGCTTTTACAAACAATCAAATATGGGTTACTCCTTACAACAAAAGTGAGCAATGGGCTGGTGGTTTATTTGCTTACCAGAGCAAAGGGGATGATACTCTTCAAGTCTGGTCCAACAGGGATCGTCCAATTGAGAATAAAGACATTGTTTTGTGGTACACAATAGGGTTCCATCATATACCCTGTCAAGAGGACTATCCTGTCATGCCTACTGTATCATCAAGTTTTGATTTGAAGCCTGCTAATTTCTTTGAGAGAAATCCAATCCTTGGAGTCCCTCCCAATTTCGAAGATGATTTACCTGTTTGCAAGGCTCGTGATTCAGCTTGA

>Glyma10g11680.4   sequence type=CDS   gene model=Glyma10g11680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGCCAAGAACTTGTGGCGCTTCCTGGTTCTTTCAATCGGTGTGGTACTAGTTTTACTTGTCACTTGGCTGCCCAACAAGGAGGCTCTAGACTGCAACCTTTACTCTGGATGGTGCACCTCAAAGAACCGGTTCTACTCTTCAGCACATCCTAATAATCCGATTAAGAAACCATCATTTTCCACATATCATCATCACAAGAACCAACACCATGAATCCGAGATTCCTCAACACCCTCTTGACCCTCTAACCATCCAAGAGTTCAACAAGGTCCGCACCATCCTTTTGAACTACCCTCTCTTCAAGTCCTCATCCAGCTACACTCTCAACTCCGTTGTCCTTGAAGAGCCAGACAAAAAACTTGTCCTCAAATGGAAAAAGGGTGATCTACCCTTGCCTAGGAAGGCTTCCGTGGTTGCATATGTGAAGGGAGACTCACATGTGCTCACGGTGGACCTCGAAACCGGCCAGGTGGTGAGCCAGGAAGCCATCACCTGGTCGGTCTCAGGTTACCCCACCATGACCCTAGAGGACATGGTGGGAGTACTTGAGGTTCCCCTCAAGAGCACCGAATTCAACCGCTCCATCACTAAACGCGGTGTCAATTTAGCAGACCTGGCATGCTTGCCAATCTCTTCAGGGTGGTATGGGACACAAGTGGAGGAGAATACAAGGTTGATTAAGGTGCAGTGCTATTCCAAAGAAGGCACTGTGAACTTCTACATGAAACCAATTGAGGGTGTGACTGCCTTAGTTGACATGAATAAAAAAGAGGTGCTGTCAATTTCAGATAATGGCCAAAACATCCCTGTGGCCAATGGAATTAACACTGACTACCGTTACTCCATTCAGAAGCTGAATGGAGGAGAGTTGAGGATGCTGAATCCAATATCCTTGGAGCAACCAAAAGGTCCAAGCTTCACAATTAATGGGCACTTGGTGAAATGGGCAAACTGGGAATTTCATCTGAGACCAGACCCAAGAGCTGGGATCATAATTTCACAAGCCAAGGTGAGGGACCCTGACACATCAAAGCTGAGAAGTGTAATGTACAAAGGGTTCACCTCTGAGCTATTTGTGCCATACATGGATCCCACACAAGATTGGTACTTTAAGACATACATGGATGCTGGTGAGTATGGATTTGGGTTGCAGGCAATGCCACTAGACCCCTTGAATGATTGCCCCAAGAATGCTTACTACATGGATGGTGTCTTTGCCTCTTCCGATGGAACACCATATCTCCAACCCAACATGATTTGCATTTTTGAGAGTTATGCTGGTGACATTGCGTGGCGACATGCAGAGTGCCCCATCACTGACCTCAAGGTTACAGAAGTGAGGCCAAAGGTGACACTAGTGGTTAGGATGGCAGCAGCAGTAGCAAACTATGACTATATCGTGGATTGGGAATTTCAAACTGATGGGCTAATCAGAGCAAAGGTTGGACTGAGTGGTATCTTGATGGTGAAAGGAACTACCTATGAGAATATGGATCAAGTTCCCAACCAAGAATATCTTTATGGAACCCTTTTGAGTGAAAACATTATAGGTGTAATCCATGACCACTTTATCACATATTACCTAGATATGGACGTTGATGGCTCTGACAATTCATTTGTTGAGGTAAACATAAAGAAGCAAGAGACCTCTCCAGGAGAATCACCCAGAAAGAGTTATCTAAAAGCTGTTAAAAAAGTGGCAAAGACAGAGAAAGATGCTCAAATAAGACTTCAACTCTATGACCCATCGGAATTTCATGTGGTGAACCCATTGAAGAAGACAAGGATAGGGAACCCTGTTGGGTACAAATTGGTTCCAGGTGCCACAGCAGCTAGCCTGCTGGATCCAGAAGATCCTCCACAGAAAAGAGCAGCTTTTACAAACAATCAAATATGGGTTACTCCTTACAACAAAAGTGAGCAATGGGCTGGTGGTTTATTTGCTTACCAGAGCAAAGGGGATGATACTCTTCAAGTCTGGTCCAACAGACTGCTGATATTTTAA

Predicted protein sequences of Glyma10g11680

Limit To All Plant Sequences

>Glyma10g11680.3   sequence type=predicted peptide   gene model=Glyma10g11680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAKNLWRFLVLSIGVVLVLLVTWLPNKEALDCNLYSGWCTSKNRFYSSAHPNNPIKKPSFSTYHHHKNQHHESEIPQHPLDPLTIQEFNKVRTILLNYPLFKSSSSYTLNSVVLEEPDKKLVLKWKKGDLPLPRKASVVAYVKGDSHVLTVDLETGQVVSQEAITWSVSGYPTMTLEDMVGVLEVPLKSTEFNRSITKRGVNLADLACLPISSGWYGTQVEENTRLIKVQCYSKEGTVNFYMKPIEGVTALVDMNKKEVLSISDNGQNIPVANGINTDYRYSIQKLNGGELRMLNPISLEQPKGPSFTINGHLVKWANWEFHLRPDPRAGIIISQAKVRDPDTSKLRSVMYKGFTSELFVPYMDPTQDWYFKTYMDAGEYGFGLQAMPLDPLNDCPKNAYYMDGVFASSDGTPYLQPNMICIFESYAGDIAWRHAECPITDLKVTEVRPKVTLVVRMAAAVANYDYIVDWEFQTDGLIRAKVGLSGILMVKGTTYENMDQVPNQEYLYGTLLSENIIGVIHDHFITYYLDMDVDGSDNSFVEVNIKKQETSPGESPRKSYLKAVKKVAKTEKDAQIRLQLYDPSEFHVVNPLKKTRIGNPVGYKLVPGATAASLLDPEDPPQKRAAFTNNQIWVTPYNKSEQWAGGLFAYQSKGDDTLQVWSNRDRPIENKDIVLWYTIGFHHIPCQEDYPVMPTVSSSFDLKPANFFERNPILGVPPNFEDDLPVCKARDSA*

>Glyma10g11680.4   sequence type=predicted peptide   gene model=Glyma10g11680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAKNLWRFLVLSIGVVLVLLVTWLPNKEALDCNLYSGWCTSKNRFYSSAHPNNPIKKPSFSTYHHHKNQHHESEIPQHPLDPLTIQEFNKVRTILLNYPLFKSSSSYTLNSVVLEEPDKKLVLKWKKGDLPLPRKASVVAYVKGDSHVLTVDLETGQVVSQEAITWSVSGYPTMTLEDMVGVLEVPLKSTEFNRSITKRGVNLADLACLPISSGWYGTQVEENTRLIKVQCYSKEGTVNFYMKPIEGVTALVDMNKKEVLSISDNGQNIPVANGINTDYRYSIQKLNGGELRMLNPISLEQPKGPSFTINGHLVKWANWEFHLRPDPRAGIIISQAKVRDPDTSKLRSVMYKGFTSELFVPYMDPTQDWYFKTYMDAGEYGFGLQAMPLDPLNDCPKNAYYMDGVFASSDGTPYLQPNMICIFESYAGDIAWRHAECPITDLKVTEVRPKVTLVVRMAAAVANYDYIVDWEFQTDGLIRAKVGLSGILMVKGTTYENMDQVPNQEYLYGTLLSENIIGVIHDHFITYYLDMDVDGSDNSFVEVNIKKQETSPGESPRKSYLKAVKKVAKTEKDAQIRLQLYDPSEFHVVNPLKKTRIGNPVGYKLVPGATAASLLDPEDPPQKRAAFTNNQIWVTPYNKSEQWAGGLFAYQSKGDDTLQVWSNRLLIF*

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