Glyma10g11670 - SoyBase

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Report for Sequence Feature Glyma10g11670

Feature Type:	gene_model
Chromosome:	Gm10
Start:	11888876
stop:	11894722
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g11670

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G13710	AT	Annotation by Michelle Graham. TAIR10: sterol methyltransferase 1 \| chr5:4424048-4426866 REVERSE LENGTH=336	SoyBase	E_val: 0	ISS
GO:0006084	GO-bp	Annotation by Michelle Graham. GO Biological Process: acetyl-CoA metabolic process	SoyBase	N/A	ISS
GO:0006598	GO-bp	Annotation by Michelle Graham. GO Biological Process: polyamine catabolic process	SoyBase	N/A	ISS
GO:0006694	GO-bp	Annotation by Michelle Graham. GO Biological Process: steroid biosynthetic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009698	GO-bp	Annotation by Michelle Graham. GO Biological Process: phenylpropanoid metabolic process	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0009805	GO-bp	Annotation by Michelle Graham. GO Biological Process: coumarin biosynthetic process	SoyBase	N/A	ISS
GO:0016126	GO-bp	Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process	SoyBase	N/A	ISS
GO:0016132	GO-bp	Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process	SoyBase	N/A	ISS
GO:0019745	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentacyclic triterpenoid biosynthetic process	SoyBase	N/A	ISS
GO:0042398	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular modified amino acid biosynthetic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0003838	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sterol 24-C-methyltransferase activity	SoyBase	N/A	ISS
GO:0008168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity	SoyBase	N/A	ISS
KOG1269	KOG	SAM-dependent methyltransferases	JGI		ISS
PTHR10108	Panther	METHYLTRANSFERASE	JGI		ISS
PTHR10108:SF21	Panther	S-ADENOSYL-L-METHIONINE:DELTA24-STEROL-C-METHYLTRANSFERASE	JGI		ISS
PF08241	PFAM	Methyltransferase domain	JGI		ISS
PF08498	PFAM	Sterol methyltransferase C-terminal	JGI		ISS
UniRef100_Q43445	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: S-adenosyl-L-methionine:delta24-sterol-C-methyltransferase n=2 Tax=Glycine max RepID=Q43445_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q43445	UniRef	Annotation by Michelle Graham. Best UniRef hit: S-adenosyl-L-methionine:delta24-sterol-C-methyltransferase n=2 Tax=Glycine max RepID=Q43445_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g11670

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g11670 not represented in the dataset	Glyma10g11670 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g11670

Paralog	Evidence	Comments
Glyma15g43200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g11670 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g090500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g11670

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g11670

Limit To All Plant Sequences

>Glyma10g11670.4   sequence type=transcript   gene model=Glyma10g11670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCCAACTCATGTTTTTTCCCGCTAGCAAAAGGACACATCGCACATGCTCTGTTTTGATGCATACATTTCCATTTCTCTATTTAACACTTGTTACCAAATTCTCGCTACATCCGCCTTCTTTTTTCTCTCTCCATCCAACATCGAAACGAGGTCGTTTTGTGTTCCGCCGAAGGCACCGGAGGTTGTAGCAGGCTAGCAGCTATGGATTTGGCATCCAATCTCGGTGGCAAGATTGACAAAGCCGAAGTTCTCTCTGCCGTTCAGAAGTATGAGAAGTATCATGTTTGCTATGGAGGTCAAGAGGAAGAGAGGAAAGCTAATTATACCGATATGGTTAATAAATACTACGATCTTGTTACCAGCTTTTATGAGTTTGGCTGGGGGGAATCTTTCCATTTTGCACCCAGATGGAAAGGGGAATCTCTTCGAGAGAGCATCAAGCGACATGAACACTTCCTTCCTTTACAACTTGGACTGAAGCCAGGGCAGAAGGTTTTGGATGTTGGATGTGGAATTGGGGGACCATTAAGAGAAATTTCTCGATTTAGCTCAACTTCAATTACCGGGTTGAATAACAATGAGTACCAGATAACAAGAGGAAAGGAACTCAATCGCATTGCTGGAGTGGACAAGACTTGCAATTTTGTCAAGGCTGACTTCATGAAAATGCCATTCCCAGACAACAGTTTTGATGCAGTGTATGCGATTGAAGCCACTTGCCATGCACCGGATGCTTATGGATGCTATAAAGAGATTTTTAGAGTGTTAAAGCCTGGTCAATATTTTGCTGCTTATGAATGGTGCATGACCGATTCTTTTGATCCCCAAAACCCAGAGCACCAAAAAATCAAGGCAGAAATTGAGATTGGTGATGGGCTACCTGACATTCGATTGACTGCTAAGTGTCTTGAAGCTCTGAAGCAAGCAGGTTTTGAGGTAATATGGGAGAAAGATCTAGCAGTGGACTCTCCTCTTCCTTGGTATTTGCCTTTAGACAAAAGTCACTTCTCACTGAGTAGCTTCCGTCTAACTGCTGTCGGGCGACTTTTCACCAAAAACATGGTCAAGGTTCTGGAGTATGTTGGACTGGCTCCAAAGGGTAGTCTAAGGGTTCAAGACTTCCTGGAGAAGGCTGCAGAGGGACTAGTTGAAGGAGGGAAGAGAGAGATTTTCACACCAATGTACTTCTTCCTGGCACGGAAGCCTGATTTAGACAGGAACTAAGCTGGCTGTACAAATAGGTTGCTGTTTTCATCAGTTACGGTGATTCTGGTTACCAACACTTCATTTTGCTGCTTGTTTCGATGAAGCAGTGCTCCTCCATATTTTGTTTACCCTACATATTATATGCTCTTTTACTTTGTTTAAAAGGATTTGCAGTTTTTGTCTTTGGTAGTTTGAATTGCGCGTAATTTTAGTCTTAGTTTTTTTTTAGCTAATTTTTTTTATAAGCAATAAGCCAATAAAGTTGCTCTAATTTTAAAACTAAGCAAATTTAGAATCAGAGCATTTTTTCTATACTCATTCAATTATTTGGGAGTTTATGATGTATTT

Coding sequences of Glyma10g11670

Limit To All Plant Sequences

>Glyma10g11670.3   sequence type=CDS   gene model=Glyma10g11670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTTGGCATCCAATCTCGGTGGCAAGATTGACAAAGCCGAAGTTCTCTCTGCCGTTCAGAAGTATGAGAAGTATCATGTTTGCTATGGAGGTCAAGAGGAAGAGAGGAAAGCTAATTATACCGATATGGTTAATAAATACTACGATCTTGTTACCAGCTTTTATGAGTTTGGCTGGGGGGAATCTTTCCATTTTGCACCCAGATGGAAAGGGGAATCTCTTCGAGAGAGCATCAAGCGACATGAACACTTCCTTCCTTTACAACTTGGACTGAAGCCAGGGCAGAAGGTTTTGGATGTTGGATGTGGAATTGGGGGACCATTAAGAGAAATTTCTCGATTTAGCTCAACTTCAATTACCGGGTTGAATAACAATGAGTACCAGATAACAAGAGGAAAGGAACTCAATCGCATTGCTGGAGTGGACAAGACTTGCAATTTTGTCAAGGCTGACTTCATGAAAATGCCATTCCCAGACAACAGTTTTGATGCAGTGTATGCGATTGAAGCCACTTGCCATGCACCGGATGCTTATGGATGCTATAAAGAGATTTTTAGAGTGTTAAAGCCTGGTCAATATTTTGCTGCTTATGAATGGTGCATGACCGATTCTTTTGATCCCCAAAACCCAGAGCACCAAAAAATCAAGGCAGAAATTGAGATTGGTGATGGGCTACCTGACATTCGATTGACTGCTAAGTGTCTTGAAGCTCTGAAGCAAGCAGGTTTTGAGGTAATATGGGAGAAAGATCTAGCAGTGGACTCTCCTCTTCCTTGGTATTTGCCTTTAGACAAAAGTCACTTCTCACTGAGTAGCTTCCGTCTAACTGCTGTCGGGCGACTTTTCACCAAAAACATGGTCAAGGTTCTGGAGTATGTTGGACTGGCTCCAAAGGGTAGTCTAAGGGTTCAAGACTTCCTGGAGAAGGCTGCAGAGGGACTAGTTGAAGGAGGGAAGAGAGAGATTTTCACACCAATGTACTTCTTCCTGGCACGGAAGCCTGATTTAGACAGGAACTAA

>Glyma10g11670.4   sequence type=CDS   gene model=Glyma10g11670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTTGGCATCCAATCTCGGTGGCAAGATTGACAAAGCCGAAGTTCTCTCTGCCGTTCAGAAGTATGAGAAGTATCATGTTTGCTATGGAGGTCAAGAGGAAGAGAGGAAAGCTAATTATACCGATATGGTTAATAAATACTACGATCTTGTTACCAGCTTTTATGAGTTTGGCTGGGGGGAATCTTTCCATTTTGCACCCAGATGGAAAGGGGAATCTCTTCGAGAGAGCATCAAGCGACATGAACACTTCCTTCCTTTACAACTTGGACTGAAGCCAGGGCAGAAGGTTTTGGATGTTGGATGTGGAATTGGGGGACCATTAAGAGAAATTTCTCGATTTAGCTCAACTTCAATTACCGGGTTGAATAACAATGAGTACCAGATAACAAGAGGAAAGGAACTCAATCGCATTGCTGGAGTGGACAAGACTTGCAATTTTGTCAAGGCTGACTTCATGAAAATGCCATTCCCAGACAACAGTTTTGATGCAGTGTATGCGATTGAAGCCACTTGCCATGCACCGGATGCTTATGGATGCTATAAAGAGATTTTTAGAGTGTTAAAGCCTGGTCAATATTTTGCTGCTTATGAATGGTGCATGACCGATTCTTTTGATCCCCAAAACCCAGAGCACCAAAAAATCAAGGCAGAAATTGAGATTGGTGATGGGCTACCTGACATTCGATTGACTGCTAAGTGTCTTGAAGCTCTGAAGCAAGCAGGTTTTGAGGTAATATGGGAGAAAGATCTAGCAGTGGACTCTCCTCTTCCTTGGTATTTGCCTTTAGACAAAAGTCACTTCTCACTGAGTAGCTTCCGTCTAACTGCTGTCGGGCGACTTTTCACCAAAAACATGGTCAAGGTTCTGGAGTATGTTGGACTGGCTCCAAAGGGTAGTCTAAGGGTTCAAGACTTCCTGGAGAAGGCTGCAGAGGGACTAGTTGAAGGAGGGAAGAGAGAGATTTTCACACCAATGTACTTCTTCCTGGCACGGAAGCCTGATTTAGACAGGAACTAA

Predicted protein sequences of Glyma10g11670

Limit To All Plant Sequences

>Glyma10g11670.3   sequence type=predicted peptide   gene model=Glyma10g11670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLASNLGGKIDKAEVLSAVQKYEKYHVCYGGQEEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLPLQLGLKPGQKVLDVGCGIGGPLREISRFSSTSITGLNNNEYQITRGKELNRIAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAYGCYKEIFRVLKPGQYFAAYEWCMTDSFDPQNPEHQKIKAEIEIGDGLPDIRLTAKCLEALKQAGFEVIWEKDLAVDSPLPWYLPLDKSHFSLSSFRLTAVGRLFTKNMVKVLEYVGLAPKGSLRVQDFLEKAAEGLVEGGKREIFTPMYFFLARKPDLDRN*

>Glyma10g11670.4   sequence type=predicted peptide   gene model=Glyma10g11670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLASNLGGKIDKAEVLSAVQKYEKYHVCYGGQEEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIKRHEHFLPLQLGLKPGQKVLDVGCGIGGPLREISRFSSTSITGLNNNEYQITRGKELNRIAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAYGCYKEIFRVLKPGQYFAAYEWCMTDSFDPQNPEHQKIKAEIEIGDGLPDIRLTAKCLEALKQAGFEVIWEKDLAVDSPLPWYLPLDKSHFSLSSFRLTAVGRLFTKNMVKVLEYVGLAPKGSLRVQDFLEKAAEGLVEGGKREIFTPMYFFLARKPDLDRN*

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