SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G11780 | AT | Annotation by Michelle Graham. TAIR10: MD-2-related lipid recognition domain-containing protein / ML domain-containing protein | chr3:3724326-3725476 REVERSE LENGTH=153 | SoyBase | E_val: 9.00E-71 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0010167 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to nitrate | SoyBase | N/A | ISS |
| GO:0015706 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nitrate transport | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG4680 | KOG | Uncharacterized conserved protein, contains ML domain | JGI | ISS | |
| PTHR11306 | Panther | NIEMANN PICK TYPE C2 PROTEIN NPC2-RELATED | JGI | ISS | |
| PF02221 | PFAM | ML domain | JGI | ISS | |
| UniRef100_B9SDL0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phosphatidylglycerol/phosphatidylinositol transfer protein, putative n=1 Tax=Ricinus communis RepID=B9SDL0_RICCO | SoyBase | E_val: 1.00E-77 | ISS |
| UniRef100_C6SXR8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SXR8_SOYBN | SoyBase | E_val: 3.00E-108 | ISS |
|
Glyma10g10310 not represented in the dataset |
Glyma10g10310 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g35040 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g083300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g10310.2 sequence type=transcript gene model=Glyma10g10310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATATTGCAGGAAATTACATACAAAAATTAGGAATATTGGTTACTTGATTTAGGGTTTGAAGGGTGGTCTTAAAGTTTTAAACTTTCCCACGAAAATGGTTGATTAAACAATTGGGTTTTTCTGTACGGATTTTTTATTTTTATATATATTGGATCGTACGTCAATTTCGTTCTTATTTGTTTTTAGGTGTTAATTTTATTCAATTAGGAAACTTACCGTTGGGGATATTTTTATGTTTATATTAATAATCTGACTTTGATTGAATAATCAGTTCTGTTCAGTTGAATTAACATATTGAATAATTACTTGAAGTTGTCTTTTAGTTGTCAGGGATTCTTCTCGTTGATTAGTTTTAAAATTTAATGGTTTACAAATTGTTTTGTTGCATCATACTATTATTCTTGCTGCTTTGCCCGTTATTGAATAAAATATTGCTTAATTATCTATGTCAGATAAGAAAGCTGACTATGATGTTGAGGTCAAAGGGGTTGAAATATCTCCTGATCCCATCGCACGAGGCCAGCCTGCTACATTCAGCATTGCTGCAACTACAGGTAAAGCTTTATCTGGAGGGAAGCTAGTGATTGATGTGTCATATTTCGGATGGCACATACACAGTGAGACCCATGACCTTTGTGGAGAAACTACTTGCCCTGTTTCAGCTGGTGATTTTGTGATTGCTCATTCCCAAGTTTTACCTGGATTCACTCCACCTGGTTCATACACTTTGAAGATGAAGATGTTCGATGGAAACAAGCATGAGTTAACCTGCATTACATTTGGTTTTGATATTGGGTTTGGTTCCTCTGTGGCTGATAGCTAATTGAAATTGGTCATCGAAATCTATGATCAGAAACAGATCTATATAAATTACTTGTACAAACTGCAAAGTACCTTTATGTTACCAGATCCTTCTTCTATAATCCAGCATGACCAGTGTCTGAATTAAGAATCAGAAAAATGTCTTGTATTTTCTGGGATTGAAAACACAAACTATGTGTTTCTTTATTTATTTTTCTATATTCTTACTACACTCAGAAGGTAGATCAACATTGTGCAATGTTTATACACATATTTTGACTGTGGTCTGAGGGTATTATCGTGATGTAATGATATATTCCTCCTTGCATATAAAATAGAGTGCCCACGTTAATATTTGGAACTAGGGATGAACATGTCATCTCATCCAAGTAATAAAATTAAAAGTCTGATGCCAAAATCCCAGTCTGTATAAGAGATAATGCCAGAAGCATAGTAATGTTGGTACATAAGTTTTTGTACTCTGCTCGATTTTGATATGAGTATCAAGGTAAATCTGGTTTAAAGAGTATCAGTG
>Glyma10g10310.1 sequence type=CDS gene model=Glyma10g10310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAATGATAAGCTCCAAATTCTTCTTCTTCTTCTTTTCAACTCTCTGTCTTCTCTACGGATTTTCCAACGCCACCGATATTCACTATTGCGATAAGAAAGCTGACTATGATGTTGAGGTCAAAGGGGTTGAAATATCTCCTGATCCCATCGCACGAGGCCAGCCTGCTACATTCAGCATTGCTGCAACTACAGGTAAAGCTTTATCTGGAGGGAAGCTAGTGATTGATGTGTCATATTTCGGATGGCACATACACAGTGAGACCCATGACCTTTGTGGAGAAACTACTTGCCCTGTTTCAGCTGGTGATTTTGTGATTGCTCATTCCCAAGTTTTACCTGGATTCACTCCACCTGGTTCATACACTTTGAAGATGAAGATGTTCGATGGAAACAAGCATGAGTTAACCTGCATTACATTTGGTTTTGATATTGGGTTTGGTTCCTCTGTGGCTGATAGCTAA >Glyma10g10310.2 sequence type=CDS gene model=Glyma10g10310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCAGATAAGAAAGCTGACTATGATGTTGAGGTCAAAGGGGTTGAAATATCTCCTGATCCCATCGCACGAGGCCAGCCTGCTACATTCAGCATTGCTGCAACTACAGGTAAAGCTTTATCTGGAGGGAAGCTAGTGATTGATGTGTCATATTTCGGATGGCACATACACAGTGAGACCCATGACCTTTGTGGAGAAACTACTTGCCCTGTTTCAGCTGGTGATTTTGTGATTGCTCATTCCCAAGTTTTACCTGGATTCACTCCACCTGGTTCATACACTTTGAAGATGAAGATGTTCGATGGAAACAAGCATGAGTTAACCTGCATTACATTTGGTTTTGATATTGGGTTTGGTTCCTCTGTGGCTGATAGCTAA
>Glyma10g10310.1 sequence type=predicted peptide gene model=Glyma10g10310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEMISSKFFFFFFSTLCLLYGFSNATDIHYCDKKADYDVEVKGVEISPDPIARGQPATFSIAATTGKALSGGKLVIDVSYFGWHIHSETHDLCGETTCPVSAGDFVIAHSQVLPGFTPPGSYTLKMKMFDGNKHELTCITFGFDIGFGSSVADS* >Glyma10g10310.2 sequence type=predicted peptide gene model=Glyma10g10310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSDKKADYDVEVKGVEISPDPIARGQPATFSIAATTGKALSGGKLVIDVSYFGWHIHSETHDLCGETTCPVSAGDFVIAHSQVLPGFTPPGSYTLKMKMFDGNKHELTCITFGFDIGFGSSVADS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
