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Report for Sequence Feature Glyma10g10280

Feature Type:gene_model
Chromosome:Gm10
Start:9944707
stop:9945743
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g10280
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G35910AT Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr2:15073225-15073878 REVERSE LENGTH=217 SoyBaseE_val: 7.00E-53ISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG1493 KOG Anaphase-promoting complex (APC), subunit 11 JGI ISS
PTHR14155Panther RING FINGER PROTEIN 6/12/38 JGI ISS
PTHR14155:SF23Panther OS01G0736600 PROTEIN (FRAGMENT) JGI ISS
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI ISS
UniRef100_G7I8H8UniRef Annotation by Michelle Graham. Most informative UniRef hit: RING finger-like protein n=1 Tax=Medicago truncatula RepID=G7I8H8_MEDTR SoyBaseE_val: 3.00E-70ISS
UniRef100_I1L9L7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L9L7_SOYBN SoyBaseE_val: 1.00E-118ISS

Expression Patterns of Glyma10g10280
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g10280
ParalogEvidenceComments
Glyma02g35090 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g10280 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g083100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g10280
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g10280
>Glyma10g10280.1   sequence type=CDS   gene model=Glyma10g10280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACAACACAACCGATTCCGGATTCCTCGGCTCCAACAACACAAGTGGCTTTGGCATGGGGATAGGAATCTCAATTGGAATTCTTCTCCTCATCACAACCATCACACTCACCTCCTACTTCTGCACAAGATCACAAGTGCCAACTCCTCCAAGGAGAAGAACAACAAGTAATTCCAACCCACAATTCCTTGAGCCACACCACACAATAGTTGATGTTGGCCTAGATGAAGCCACAATCATGAACTACCCCAAGATGCTCTACTCTGAAGCCAAACTAAGGAAATTTGATTCCACTTCAACAAGCTGCTCCATATGTCTTGGAGATTACAAAGGTTCTGATTTTCTAAGGGTGTTGCCTGATTGTGACCATGTCTTCCACCTTAAGTGCATTGACCCTTGGTTGAGGCTGCATCCAACATGTCCTCTCTGCAGAACATCTCCAATTCCAACACCTCTGTCAACTCCTCTGGCTGAAGTGGTCCCTTTAGCAACCAGGCGAGATTAA
Predicted protein sequences of Glyma10g10280
>Glyma10g10280.1   sequence type=predicted peptide   gene model=Glyma10g10280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNNTTDSGFLGSNNTSGFGMGIGISIGILLLITTITLTSYFCTRSQVPTPPRRRTTSNSNPQFLEPHHTIVDVGLDEATIMNYPKMLYSEAKLRKFDSTSTSCSICLGDYKGSDFLRVLPDCDHVFHLKCIDPWLRLHPTCPLCRTSPIPTPLSTPLAEVVPLATRRD*






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