Glyma10g10240 - SoyBase

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Report for Sequence Feature Glyma10g10240

Feature Type:	gene_model
Chromosome:	Gm10
Start:	9881925
stop:	9887009
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g10240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G06510	AT	Annotation by Michelle Graham. TAIR10: nuclear factor Y, subunit A10 \| chr5:1985439-1986591 FORWARD LENGTH=269	SoyBase	E_val: 3.00E-63	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009718	GO-bp	Annotation by Michelle Graham. GO Biological Process: anthocyanin-containing compound biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016602	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: CCAAT-binding factor complex	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
KOG1561	KOG	CCAAT-binding factor, subunit B (HAP2)	JGI		ISS
PTHR12632	Panther	TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED	JGI		ISS
PTHR12632:SF9	Panther		JGI		ISS
PF02045	PFAM	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B	JGI		ISS
UniRef100_B3IX28	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor CCAAT n=1 Tax=Lotus japonicus RepID=B3IX28_LOTJA	SoyBase	E_val: 5.00E-167	ISS
UniRef100_I1L9L5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L9L5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g10240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g10240

Paralog	Evidence	Comments
Glyma02g35190	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g10240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g082800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g10240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g10240

Limit To All Plant Sequences

>Glyma10g10240.3   sequence type=transcript   gene model=Glyma10g10240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACTTTGCTTATTCTTCTCTCTTGTACGTGTTAGTGTGTACTATGTTTGTGTGTTTGTGTTTTGCTTCATTTAGTACCGACATGGCTCCAAACTAATGGGGGTGTTCCTCCATTCATCTACTTCTTCTTAGAAACCGATTCTGCCATACTCGTTCTTCTGCTTTTACCACTTGGGAGCATTCAAGTTTTGCTTGAGTCCTTATAGCTTAGGCTCTTTGGAACAATCTTAATCTTCTTTTTATAGAATTTTATTGGTAAAATACAAATTAAAGTTTTGTTTTTCATATCTATTTTTTTTTTATGACAGGATAAAATTTGAGGCAGAACTGTAGTTTCTAGAAACTTGACAGAGCTAAGAGAATCTTGGTAATTATAGGCAGTAGATTACTTTATTAACTGTGTATAAACAAGTCATCGTTTGGAGGCTATAGATGGCGATGCAAACCGTTTACCTGAAAGAACATGAAGGACTTGTCTACAATTCTGTTGGACAGTTGTCATCTGTAACTTCAGCTCCATGGTGGAGTGCCTTAGGATCTCAACCAGTTTATGGGGAGTATTGTGGTCAAATCAAACCCTTTTCGTTCGAGATTTCCAACTACGTCGACCAATTCCCAGCCGGTAAGCAAGCGGTACGAGGAGTTGAACAATTGTTGGATAAAGGACATACAACAACCCAGTTTACCATCTTTCCAGATGATTGTAAAATGTCAGGTGATGCAGAAAATCCTCAGGCAACCTTATCACTGCAGTCATCACTTGCTGAGCCCCACAATCGTTTTGAGATAGGGTTTAATCAGCCAATGATCTGTGCAAAATATCCTTACATGGATCAATTTTATGGACTCTTCTCAGCTTTTGGACCTCAAATTTCGGGACGGATAATGCTTCCAATTAACTTGACATCCGATGACGGACCAACTTACGTAAATGCGAAGCAGTACCATGGAATCATCAGACGTCGGCTATCACGTGCAAAAGCCGTACTTGAGAACAAAATGATTAAACGTCGCAAGCCATATATGCATGAATCACGCCATCTACATGCATTGCGGCGACCAAGAGGATGTGGTGGTCGCTTCTTGAACACAAAAGGCTCTACTAATGGAAATGGTAGAAATGAAAGCAAAGTGAATAAAACTGGCGGCCGACAATTGCAGTCCAGTGCCTCTCAGAGTTCTGAAGTCCTGCATTCTGAGGTTGGAACTTTAAATTCCTCAAAGGAGACAAATCGAAGCAGTCCAAACATCTCTGGTTCAGAGGTGACTAGCATGTATTCAAGGGAAGGTTTTGATGGTTTTTCTGTCAATCGTCTTGGATCTTCCGTTCACTCCCTAGTGGACATGGTATTATCACGCCCACTAAATGGGTTGCAGCAGTATCAGGTAACTGCTGCAACCTTAAAGTTTGATTAGCAACGAGACTAGTGGGCTTGGTGCTGCGATGTTGCAGCACCACCCTATCCTTGCAAGGGACCAGGTGAGGAACTTCTGTTGCAGTTTCTTGTGTTCATTGTGACGAATTTCGTTCTGGAGGTGTGATTCTTCATCTGGTTTTAGGCAAACCATTCTTGGCTACTGCTTAGGCAACTCATCCTTGGCTCATTATATTAGTAGTACTGTCTTTTTCTTTCTGCACAGGCTTGTCATGACATGGTCATACATGCTAATGGCTTCATATCCTGATGCAGTAGACTATGATGTGTCTGTGTTAAAATAACAAGAATTCTGGTTTCGTGTGTTTTTTAGTTATGTCTAGGTGTGGTATTTTGTTCTGGATTTCTGACTTTGTGTGGAGCTATGTAACATAGAACTCTGTATTGTGATCTTTGTTAGAAAAATAAAACATCGATCTGGACTTACCCTCCTATGAAATGTCAAAATTTTATTATCTTTTGCGTTTGGAAAATATGGACACCATACAAGAAGTCACAAGCAGGTGTGATGTGTAGACCCCTCCCCCCATATTTTCTCTTTCCCTAAGCTGGTTATGGTTTTGTACAAGGAACATGAGGTACACAACTTTCAACACAGATTATGTGGACTTGTTGATATTGATAACCATATCATCAATCCATTAGCTGAATAACGAAATTGATCTGAGTAATGAGGTACACAACTTTAAACACA

Coding sequences of Glyma10g10240

Limit To All Plant Sequences

>Glyma10g10240.2   sequence type=CDS   gene model=Glyma10g10240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGATGCAAACCGTTTACCTGAAAGAACATGAAGGACTTGTCTACAATTCTGTTGGACAGTTGTCATCTGTAACTTCAGCTCCATGGTGGAGTGCCTTAGGATCTCAACCAGTTTATGGGGAGTATTGTGGTCAAATCAAACCCTTTTCGTTCGAGATTTCCAACTACGTCGACCAATTCCCAGCCGGTAAGCAAGCGGTACGAGGAGTTGAACAATTGTTGGATAAAGGACATACAACAACCCAGTTTACCATCTTTCCAGATGATTGTAAAATGTCAGGTGATGCAGAAAATCCTCAGGCAACCTTATCACTGCAGTCATCACTTGCTGAGCCCCACAATCGTTTTGAGATAGGGTTTAATCAGCCAATGATCTGTGCAAAATATCCTTACATGGATCAATTTTATGGACTCTTCTCAGCTTTTGGACCTCAAATTTCGGGACGGATAATGCTTCCAATTAACTTGACATCCGATGACGGACCAACTTACGTAAATGCGAAGCAGTACCATGGAATCATCAGACGTCGGCTATCACGTGCAAAAGCCGTACTTGAGAACAAAATGATTAAACGTCGCAAGCCATATATGCATGAATCACGCCATCTACATGCATTGCGGCGACCAAGAGGATGTGGTGGTCGCTTCTTGAACACAAAAGGCTCTACTAATGGAAATGGTAGAAATGAAAGCAAAGTGAATAAAACTGGCGGCCGACAATTGCAGTCCAGTGCCTCTCAGAGTTCTGAAGTCCTGCATTCTGAGGTTGGAACTTTAAATTCCTCAAAGGAGACAAATCGAAGCAGTCCAAACATCTCTGGTTCAGAGGTGACTAGCATGTATTCAAGGGAAGGTTTTGATGGTTTTTCTGTCAATCGTCTTGGATCTTCCGTTCACTCCCTAGTGGACATGGTATTATCACGCCCACTAAATGGGTTGCAGCAGTATCAGGTAACTGCTGCAACCTTAAAGTTTGATTAG

>Glyma10g10240.3   sequence type=CDS   gene model=Glyma10g10240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGATGCAAACCGTTTACCTGAAAGAACATGAAGGACTTGTCTACAATTCTGTTGGACAGTTGTCATCTGTAACTTCAGCTCCATGGTGGAGTGCCTTAGGATCTCAACCAGTTTATGGGGAGTATTGTGGTCAAATCAAACCCTTTTCGTTCGAGATTTCCAACTACGTCGACCAATTCCCAGCCGGTAAGCAAGCGGTACGAGGAGTTGAACAATTGTTGGATAAAGGACATACAACAACCCAGTTTACCATCTTTCCAGATGATTGTAAAATGTCAGGTGATGCAGAAAATCCTCAGGCAACCTTATCACTGCAGTCATCACTTGCTGAGCCCCACAATCGTTTTGAGATAGGGTTTAATCAGCCAATGATCTGTGCAAAATATCCTTACATGGATCAATTTTATGGACTCTTCTCAGCTTTTGGACCTCAAATTTCGGGACGGATAATGCTTCCAATTAACTTGACATCCGATGACGGACCAACTTACGTAAATGCGAAGCAGTACCATGGAATCATCAGACGTCGGCTATCACGTGCAAAAGCCGTACTTGAGAACAAAATGATTAAACGTCGCAAGCCATATATGCATGAATCACGCCATCTACATGCATTGCGGCGACCAAGAGGATGTGGTGGTCGCTTCTTGAACACAAAAGGCTCTACTAATGGAAATGGTAGAAATGAAAGCAAAGTGAATAAAACTGGCGGCCGACAATTGCAGTCCAGTGCCTCTCAGAGTTCTGAAGTCCTGCATTCTGAGGTTGGAACTTTAAATTCCTCAAAGGAGACAAATCGAAGCAGTCCAAACATCTCTGGTTCAGAGGTGACTAGCATGTATTCAAGGGAAGGTTTTGATGGTTTTTCTGTCAATCGTCTTGGATCTTCCGTTCACTCCCTAGTGGACATGGTATTATCACGCCCACTAAATGGGTTGCAGCAGTATCAGGTAACTGCTGCAACCTTAAAGTTTGATTAG

Predicted protein sequences of Glyma10g10240

Limit To All Plant Sequences

>Glyma10g10240.2   sequence type=predicted peptide   gene model=Glyma10g10240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAMQTVYLKEHEGLVYNSVGQLSSVTSAPWWSALGSQPVYGEYCGQIKPFSFEISNYVDQFPAGKQAVRGVEQLLDKGHTTTQFTIFPDDCKMSGDAENPQATLSLQSSLAEPHNRFEIGFNQPMICAKYPYMDQFYGLFSAFGPQISGRIMLPINLTSDDGPTYVNAKQYHGIIRRRLSRAKAVLENKMIKRRKPYMHESRHLHALRRPRGCGGRFLNTKGSTNGNGRNESKVNKTGGRQLQSSASQSSEVLHSEVGTLNSSKETNRSSPNISGSEVTSMYSREGFDGFSVNRLGSSVHSLVDMVLSRPLNGLQQYQVTAATLKFD*

>Glyma10g10240.3   sequence type=predicted peptide   gene model=Glyma10g10240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAMQTVYLKEHEGLVYNSVGQLSSVTSAPWWSALGSQPVYGEYCGQIKPFSFEISNYVDQFPAGKQAVRGVEQLLDKGHTTTQFTIFPDDCKMSGDAENPQATLSLQSSLAEPHNRFEIGFNQPMICAKYPYMDQFYGLFSAFGPQISGRIMLPINLTSDDGPTYVNAKQYHGIIRRRLSRAKAVLENKMIKRRKPYMHESRHLHALRRPRGCGGRFLNTKGSTNGNGRNESKVNKTGGRQLQSSASQSSEVLHSEVGTLNSSKETNRSSPNISGSEVTSMYSREGFDGFSVNRLGSSVHSLVDMVLSRPLNGLQQYQVTAATLKFD*

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