SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G65540 | AT | Annotation by Michelle Graham. TAIR10: LETM1-like protein | chr1:24362382-24366011 REVERSE LENGTH=736 | SoyBase | E_val: 2.00E-55 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005509 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calcium ion binding | SoyBase | N/A | ISS |
| PTHR14009 | Panther | LEUCINE ZIPPER-EF-HAND CONTAINING TRANSMEMBRANE PROTEIN | JGI | ISS | |
| PTHR14009:SF1 | Panther | LEUCINE ZIPPER-EF-HAND CONTAINING TRANSMEMBRANE PROTEIN | JGI | ISS | |
| PF07766 | PFAM | LETM1-like protein | JGI | ISS | |
| UniRef100_G7KSF6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: LETM1 and EF-hand domain-containing protein n=1 Tax=Medicago truncatula RepID=G7KSF6_MEDTR | SoyBase | E_val: 3.00E-60 | ISS |
| UniRef100_I1L9K0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1L9K0_SOYBN | SoyBase | E_val: 9.00E-68 | ISS |
|
Glyma10g09941 not represented in the dataset |
Glyma10g09941 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g080600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g09941.2 sequence type=transcript gene model=Glyma10g09941 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGGGCAAAGAAGTTTCGTCATTGGTGGGATGAATTTAAGTCTACCCTGCAACACTACTAGTTTGGTACAAAACTACTTTGGGCTGATATTAGGATAAGCTCCAGATTATTGTTGAAACTTGTCGGTGGAAAGAGTCTTTCTAGAAGGGAGAGGCAGCAACTCACAAGGACAACAACTGATATTTTCAGACAAGATGAAAGAACAGGAGGCATTGAAAAGAAGGTTAAATGCAAGAATAGAATATGCCAAGTTTCTTCAAGATACTATAAAAGAAATGGCAAAGGAGATTCATAACTCACAAAGTGGAGAAATGAAGAAGACAGCAAAAGATCTTGATGAATTTATGAACAAGGTCAGAACAGGTGCTCGAGTTTCTAACGATGAAATCTTAGGATTTGCCAAATTATTTAATGATGAGCTCACCCTGGATAACATTAGCAAGTTGGATTATGATGGGAAAGTGACACCTGAGGAGGTAGTATCTGTTGCTATGTATCTGAAGGACACTCTGGGCAAAGAAGGAATTCATGAGCTTATCAGCAACCTTTCCAAGGATAGCGTTCAACTCATTGTCAAAGACAGTTTCCCAAGCCATCTTGGGACTTCAATGATAAATTTCTTCACAACTGAAAATGAATCATTCTCTAAACCAAATGAAAGTCAGTCACCTCCGTGA
>Glyma10g09941.1 sequence type=CDS gene model=Glyma10g09941 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTTATTGTTGCCAGTATTCCTTAAATTATTTCCCAACATGCTGCCTTCCACTTTCCAGGACAAGATGAAAGAACAGGAGGCATTGAAAAGAAGGTTAAATGCAAGAATAGAATATGCCAAGTTTCTTCAAGATACTATAAAAGAAATGGCAAAGGAGATTCATAACTCACAAAGTGGAGAAATGAAGAAGACAGCAAAAGATCTTGATGAATTTATGAACAAGGTCAGAACAGGTGCTCGAGTTTCTAACGATGAAATCTTAGGATTTGCCAAATTATTTAATGATGAGCTCACCCTGGATAACATTAGCAAGTTGGATTATGATGGGAAAGTGACACCTGAGGAGGTAGTATCTGTTGCTATGTATCTGAAGGACACTCTGGGCAAAGAAGGAATTCATGAGCTTATCAGCAACCTTTCCAAGGATAGCGTTCAACTCATTGTCAAAGACAGTTTCCCAAGCCATCTTGGGACTTCAATGATAAATTTCTTCACAACTGAAAATGAATCATTCTCTAAACCAAATGAAAGTCAGTCACCTCCGTGA >Glyma10g09941.2 sequence type=CDS gene model=Glyma10g09941 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAGAACAGGAGGCATTGAAAAGAAGGTTAAATGCAAGAATAGAATATGCCAAGTTTCTTCAAGATACTATAAAAGAAATGGCAAAGGAGATTCATAACTCACAAAGTGGAGAAATGAAGAAGACAGCAAAAGATCTTGATGAATTTATGAACAAGGTCAGAACAGGTGCTCGAGTTTCTAACGATGAAATCTTAGGATTTGCCAAATTATTTAATGATGAGCTCACCCTGGATAACATTAGCAAGTTGGATTATGATGGGAAAGTGACACCTGAGGAGGTAGTATCTGTTGCTATGTATCTGAAGGACACTCTGGGCAAAGAAGGAATTCATGAGCTTATCAGCAACCTTTCCAAGGATAGCGTTCAACTCATTGTCAAAGACAGTTTCCCAAGCCATCTTGGGACTTCAATGATAAATTTCTTCACAACTGAAAATGAATCATTCTCTAAACCAAATGAAAGTCAGTCACCTCCGTGA
>Glyma10g09941.1 sequence type=predicted peptide gene model=Glyma10g09941 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MELLLPVFLKLFPNMLPSTFQDKMKEQEALKRRLNARIEYAKFLQDTIKEMAKEIHNSQSGEMKKTAKDLDEFMNKVRTGARVSNDEILGFAKLFNDELTLDNISKLDYDGKVTPEEVVSVAMYLKDTLGKEGIHELISNLSKDSVQLIVKDSFPSHLGTSMINFFTTENESFSKPNESQSPP* >Glyma10g09941.2 sequence type=predicted peptide gene model=Glyma10g09941 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKEQEALKRRLNARIEYAKFLQDTIKEMAKEIHNSQSGEMKKTAKDLDEFMNKVRTGARVSNDEILGFAKLFNDELTLDNISKLDYDGKVTPEEVVSVAMYLKDTLGKEGIHELISNLSKDSVQLIVKDSFPSHLGTSMINFFTTENESFSKPNESQSPP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
