SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma10g09720

Feature Type:gene_model
Chromosome:Gm10
Start:9034096
stop:9035270
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g09720
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G35460AT Annotation by Michelle Graham. TAIR10: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr2:14905788-14906504 FORWARD LENGTH=238 SoyBaseE_val: 1.00E-30ISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
PTHR19957Panther SYNTAXIN JGI ISS
PTHR19957:SF11Panther SYNTAXIN-RELATED JGI ISS
UniRef100_I1L9J6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L9J6_SOYBN SoyBaseE_val: 7.00E-159ISS
UniRef100_Q8S8Z8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Syringolide-induced protein B13-1-9 n=1 Tax=Glycine max RepID=Q8S8Z8_SOYBN SoyBaseE_val: 4.00E-49ISS

Expression Patterns of Glyma10g09720
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g09720 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g079700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g09720
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g09720
>Glyma10g09720.2   sequence type=CDS   gene model=Glyma10g09720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTGAGTTACGCATGCCCAAATGTCAAACATGGCACGACAGACGCGCAAATCCAACCCCTCCTTATCCTGCACATAAACATATACTATTATACACATACCTATCACTTCGCAGCCACGAAACAAAACGCACTTTACATCACCATAGTTTAATTACGCTCGTTCGAATTTTCTTGTCCGCGCCAGACATGGCTGATACCCAACCGCGACCAAACGACGCCGTTCCTTCGAAGGAGCGCCTCGGCACACGATGCTGTCACTGCCTCTGCCAAACATTCTGGATCCTTTTGGTTCTCATAATCACCATCGTCATGCTTGCGATTCTTGTCCTGTACATCATCATCACACCACGCTCCTTCAGGTTCACCCTGATTGACGCGAACCTCACACAATTTGATTACACCGCCAACAACAGCACTCTCTACTACGACCTCGTTCTCAACATCACCGCGCACAACCCCAACAAGAGGCTCAAGATCTACTACGACGTCGTTCGGGCCCACGCGCTTTACCGGCGCGTGGAGTTCTCCGCCGCCGACGTCAACATGCCCTGGAACGGCTACCTTCAGGACAAGAAGGGCACGAACTTCTTCGGCGCTGTTTTCTCGGGACAACGTGTGATGGGGCTGAATAGAGACCAAATCGCGGAAGATAAAAAAGATGGGATGTTCCCTATTGACCTTAAGATTCATTTTACTATGAGGTTCAGGCTTGATGATTTTCAGTTAGGTCACTACTATCCCAGAGGCACGTGTGAGCTCAAGGTACCTTTGACTTCTAATAATGGAAATAAGGTGGCTTCTTTTCACCCTGCCATGTGCGAAATCGACTTCTGA
Predicted protein sequences of Glyma10g09720
>Glyma10g09720.2   sequence type=predicted peptide   gene model=Glyma10g09720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTELRMPKCQTWHDRRANPTPPYPAHKHILLYTYLSLRSHETKRTLHHHSLITLVRIFLSAPDMADTQPRPNDAVPSKERLGTRCCHCLCQTFWILLVLIITIVMLAILVLYIIITPRSFRFTLIDANLTQFDYTANNSTLYYDLVLNITAHNPNKRLKIYYDVVRAHALYRRVEFSAADVNMPWNGYLQDKKGTNFFGAVFSGQRVMGLNRDQIAEDKKDGMFPIDLKIHFTMRFRLDDFQLGHYYPRGTCELKVPLTSNNGNKVASFHPAMCEIDF*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo