Report for Sequence Feature Glyma10g09490
Feature Type: gene_model
Chromosome: Gm10
Start: 8676654
stop: 8678658
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma10g09490
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G52500 AT
Annotation by Michelle Graham. TAIR10: Eukaryotic aspartyl protease family protein | chr3:19465644-19467053 REVERSE LENGTH=469
SoyBase E_val: 6.00E-156 ISS
GO:0000271 GO-bp
Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process
SoyBase N/A ISS
GO:0006508 GO-bp
Annotation by Michelle Graham. GO Biological Process: proteolysis
SoyBase N/A ISS
GO:0006546 GO-bp
Annotation by Michelle Graham. GO Biological Process: glycine catabolic process
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0005618 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cell wall
SoyBase N/A ISS
GO:0009505 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0004190 GO-mf
Annotation by Michelle Graham. GO Molecular Function: aspartic-type endopeptidase activity
SoyBase N/A ISS
KOG1339
KOG
Aspartyl protease
JGI ISS
PTHR13683 Panther
ASPARTYL PROTEASES
JGI ISS
PTHR13683:SF98 Panther
CHLOROPLAST NUCLEIOD DNA-BINDING-RELATED
JGI ISS
PF00026 PFAM
Eukaryotic aspartyl protease
JGI ISS
UniRef100_B9T7L5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pepsin A, putative n=1 Tax=Ricinus communis RepID=B9T7L5_RICCO
SoyBase E_val: 2.00E-158 ISS
UniRef100_I1L9I6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1L9I6_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma10g09490
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma10g09490
Paralog Evidence Comments
Glyma02g35730 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma10g09490 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.10g078600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma10g09490
Coding sequences of Glyma10g09490
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g09490.2 sequence type=CDS gene model=Glyma10g09490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCAACTACGCCTTTTCAAATTTATAATTCACACCCATTCCACACCCTCCAACTCGCCGTCTCCACATCCATCACAAGAGCCCACCACCTCAAAAACCACAACAACCCTAGTTCACTCAAAACCCTAGTTCACCCCAAAACCTACGGAGGCTACTCAATAGACCTCAAATTCGGAACCCCACCACAAACGTTCCCCTTCGTTCTCGACACTGGAAGCAGCCTCGTCTGGCTCCCATGCTACTCCCACTACCTCTGCTCCAAATGCAACTCTTTCTCAAACAACAACACACCAAAATTCATCCCAAAAGACTCATTTTCTTCAAAGTTTGTTGGCTGCAGAAACCCTAAATGCGCTTGGGTCTTTGGCTCCGACGTTACGTCTCATTGTTGCAAGCTAGCCAAAGCCGCTTTTAGTAATAACAATAACTGTTCCCAAACATGCCCTGCATACACCGTCCAATACGGTCTCGGCTCCACCGCGGGTTTTCTCTTATCAGAAAATCTCAATTTTCCCGCAAAAAATGTTTCTGATTTTCTCGTCGGCTGCTCCGTCGTCTCTGTCTACCAGCCTGGCGGAATCGCCGGGTTCGGCCGGGGAGAAGAGTCCTTACCGGCGCAGATGAACCTCACGAGATTCTCTTATTGCCTACTCTCTCACCAATTCGACGAATCGCCGGAAAACAGCGACCTCGTCATGGAAGCTACCAACTCCGGCGAGGGAAAAAAAACCAACGGCGTCAGCTACACGGCGTTTCTGAAAAATCCGTCAACAAAAAAGCCCGCGTTCGGCGCGTACTATTATATCACTCTTAGAAAAATTGTTGTTGGTGAAAAGCGCGTGAGGGTTCCGAGGAGGATGTTGGAGCCCGACGTTAACGGCGACGGCGGGTTCATCGTTGACTCGGGGTCAACGTTAACATTCATGGAGAGGCCGATTTTCGATCTGGTAGCGGAGGAGTTTGTAAAGCAGGTGAACTACACGCGCGCGAGGGAGCTTGAAAAACAGTTTGGGCTGAGTCCGTGTTTTGTTTTGGCGGGTGGCGCTGAAACGGCGTCGTTTCCCGAGATGAGGTTTGAGTTCAGGGGTGGCGCGAAGATGAGGCTGCCGGTGGCGAATTATTTCTCGCGGGTGGGGAAAGGTGACGTGGCGTGCTTGACGATTGTTTCTGATGACGTGGCGGGTCAGGGTGGGGCGGTGGGGCCCGCAGTGATATTGGGGAACTATCAGCAACAGAATTTCTACGTGGAGTGTGACTTGGAGAATGAAAGGTTTGGGTTTCGGAGTCAGAGTTGCCAAAAGAGGGTTTATTAA
Predicted protein sequences of Glyma10g09490
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma10g09490.2 sequence type=predicted peptide gene model=Glyma10g09490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MATTPFQIYNSHPFHTLQLAVSTSITRAHHLKNHNNPSSLKTLVHPKTYGGYSIDLKFGTPPQTFPFVLDTGSSLVWLPCYSHYLCSKCNSFSNNNTPKFIPKDSFSSKFVGCRNPKCAWVFGSDVTSHCCKLAKAAFSNNNNCSQTCPAYTVQYGLGSTAGFLLSENLNFPAKNVSDFLVGCSVVSVYQPGGIAGFGRGEESLPAQMNLTRFSYCLLSHQFDESPENSDLVMEATNSGEGKKTNGVSYTAFLKNPSTKKPAFGAYYYITLRKIVVGEKRVRVPRRMLEPDVNGDGGFIVDSGSTLTFMERPIFDLVAEEFVKQVNYTRARELEKQFGLSPCFVLAGGAETASFPEMRFEFRGGAKMRLPVANYFSRVGKGDVACLTIVSDDVAGQGGAVGPAVILGNYQQQNFYVECDLENERFGFRSQSCQKRVY*