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Report for Sequence Feature Glyma10g09320

Feature Type:gene_model
Chromosome:Gm10
Start:8412612
stop:8413740
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g09320
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G04820AT Annotation by Michelle Graham. TAIR10: ovate family protein 13 | chr5:1399685-1400467 FORWARD LENGTH=260 SoyBaseE_val: 9.00E-38ISS
GO:0045892GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
PF04844PFAM Protein of unknown function, DUF623 JGI ISS
UniRef100_I1L9I1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L9I1_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q9FMC8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ovate family protein 13 n=1 Tax=Arabidopsis thaliana RepID=Q9FMC8_ARATH SoyBaseE_val: 4.00E-35ISS

Expression Patterns of Glyma10g09320
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g09320
ParalogEvidenceComments
Glyma02g35980 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g09320 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g077700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g09320
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g09320
>Glyma10g09320.1   sequence type=CDS   gene model=Glyma10g09320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGTTTTTTAATCTTCTGAAAAGCAGACATGTCAGATCCTCCTCCTCTTCTTCATCAAGGGCCTGGCCATCCTGCCACCAACCCAAAACCCTCTCTTTTAGAGTCACCACCACCAAAATTAACAATGAGGAAGACAATAACAACAACAACAACGTCGTCAACGACGTTGTTTTGAAAGACATTAACTCAGCGTTAGTGTCACAAACTCCAGAATCGTTTTTCACCGAGTCTCCGGACTCGGCAAGCTTCTCAACAACTTCCGAGTTGTCTCGTGGCATGGACCCCATAGAGGCGGTGATTCGCGGCCTGCGTTCGGATCGACTTTTCTTCGATCCGGACGAGGCAAGCTGCATATTAGAGGCCAAACCGACGACGACGAGCCTAGAGCCTTTCAAAAACAGCGTCGTTTTGACGATGGATTCAGAGGACCCTCACGTGGATTTCCGCAAATCCATGGAGGAGATGGTGGAGACTCTCGGCGTCGAAGACTGGGAGAGTCTCGAGGACCTTCTGTGCTGGTACTTGCAGGCAAACACCAAGAGCAATCACGAGTATATCATTGGAGCATTCGTTGATTTGTTGTTCGATCTGGCTGTTCCAAATTCACCTTGTTCACAAGACGATGACGAAAATCTTCATTCTCACTCTCATTCTCGTCCTTCTTCTCCTTTATCGTTTTATAACTCTTCTTCTTCTCCCTCATCCTCTTGCAGCACTCCCTATTGTATAAAAGGTGAAGTGGAAGAGGAAGAGGTTGGTGCTTGTAGTTCTTTTTTTTCTTTAGCGCAGCTTAATAATTAA
Predicted protein sequences of Glyma10g09320
>Glyma10g09320.1   sequence type=predicted peptide   gene model=Glyma10g09320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKFFNLLKSRHVRSSSSSSSRAWPSCHQPKTLSFRVTTTKINNEEDNNNNNNVVNDVVLKDINSALVSQTPESFFTESPDSASFSTTSELSRGMDPIEAVIRGLRSDRLFFDPDEASCILEAKPTTTSLEPFKNSVVLTMDSEDPHVDFRKSMEEMVETLGVEDWESLEDLLCWYLQANTKSNHEYIIGAFVDLLFDLAVPNSPCSQDDDENLHSHSHSRPSSPLSFYNSSSSPSSSCSTPYCIKGEVEEEEVGACSSFFSLAQLNN*






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