Report for Sequence Feature Glyma10g09280
Feature Type: gene_model
Chromosome: Gm10
Start: 8389350
stop: 8392565
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma10g09280
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G52560 AT
Annotation by Michelle Graham. TAIR10: ubiquitin E2 variant 1D-4 | chr3:19494678-19495954 REVERSE LENGTH=146
SoyBase E_val: 6.00E-101 ISS
GO:0006007 GO-bp
Annotation by Michelle Graham. GO Biological Process: glucose catabolic process
SoyBase N/A ISS
GO:0006301 GO-bp
Annotation by Michelle Graham. GO Biological Process: postreplication repair
SoyBase N/A ISS
GO:0006605 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein targeting
SoyBase N/A ISS
GO:0006623 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole
SoyBase N/A ISS
GO:0006974 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to DNA damage stimulus
SoyBase N/A ISS
GO:0016192 GO-bp
Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0031372 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: UBC13-MMS2 complex
SoyBase N/A ISS
GO:0004842 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
GO:0016881 GO-mf
Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity
SoyBase N/A ISS
KOG0896
KOG
Ubiquitin-conjugating enzyme E2
JGI ISS
PTHR24067 Panther
UBIQUITIN-CONJUGATING ENZYME E2
JGI ISS
PTHR24067:SF8 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00179 PFAM
Ubiquitin-conjugating enzyme
JGI ISS
UniRef100_E9JFV5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin-conjugating family protein n=3 Tax=fabids RepID=E9JFV5_9ROSI
SoyBase E_val: 7.00E-104 ISS
UniRef100_I1L9H8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L9H8_SOYBN
SoyBase E_val: 6.00E-105 ISS
Expression Patterns of Glyma10g09280
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma10g09280
Paralog Evidence Comments
Glyma02g35990 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma10g09280 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.10g077600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma10g09280
Transcripts of Glyma10g09280
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g09280.2 sequence type=transcript gene model=Glyma10g09280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
CGGGGGACCAATGGTAGTACATTGCGAAAATCTACGCCCTTCTTTCATCATTCATCGCTTTCCACCAGGCACGCAGATTCTCTCCTTCCTTCTCTCTATCCAAATTTTGATTCTTTCGATCAAACCCGCAACACCCACCTCACCAAAACCCTACGCAACCCATCCATGACGCTTGGCTTAGGAGGATCCAGTGTCGTGGTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGAGAAAAAGGAATTGGAGATGGCACAGTTAGCTATGGAATGGATGATGGTGATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGACTACCCAGAAAAGCCCCCAAGTGTTCGGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTGGTATCATTTATAATTTTTCACATGCTTTCATTTTATAAATATCTTTGTGCAGTGCATGCTGGGACATATAAAATGTGCTAATAACAGTGTTTTTCCTCTTTAATTTTACAATTGGCGATAACTTGAGATGCCTGTTATTTCTAATCAAGTTCAATGTGGATTTTTGGGAAGGAAATAATTGGATATATTTTATTCATACTTTATTCGAAAGCAAGAGTCGACTCAGCTTCATATCGTGACACTTCTCATATTTATGATAATGTGAAATCCACAGTCCATTTTGCAAACTTAAAGACTGTTTATCTGCGAAGCAAGATTTATAGACTTGTAAATGAAACAGGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACCATGGAGGACATACTGACCCAGCTGAAGAAGGAAATGGCTGCTCCTCATAACCGGAAGCTTGTCCAGCCTCCGGAAGGTACCTACTTTTAGCATCCAACAAGATGGTATAGATGTCGGATCGTATTGCATATGCTGCATGCAATATATAGTGTGTAATGCTTTGTAGATCCTTCCTTCTGAATTCAAGAACATAGGGGAATGCCCCGAAAAGCTTCATATTTCCATCTCCATGGCTTCAGAGTTGTTTTGTTGTCTTTGTCAACGGTGCTGAAGGGGACTGTTTGATTGAAATATTGTGTGTGTCAAAAATTTCGAAAGCAACTCTTTCAAGTAGTATTTTCATGTGAATGTGTGCTTTTGTCTATGGTTTGGTTCACTCTAATTAGTGGGTTCTCACTTCTCACCTTTAAATTCTCTGATTGAGAGTTGTGCATTTAATCTTTGTAAATATATTTGAGTTTTTACCCCCTTTTGTTAGGATATACAAATGTTTTTGTTGTAA
Coding sequences of Glyma10g09280
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g09280.1 sequence type=CDS gene model=Glyma10g09280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGACGCTTGGCTTAGGAGGATCCAGTGTCGTGGTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGAGAAAAAGGAATTGGAGATGGCACAGTTAGCTATGGAATGGATGATGGTGATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGACTACCCAGAAAAGCCCCCAAGTGTTCGGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTGGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACCATGGAGGACATACTGACCCAGCTGAAGAAGGAAATGGCTGCTCCTCATAACCGGAAGCTTGTCCAGCCTCCGGAAGGTACCTACTTTTAG
>Glyma10g09280.2 sequence type=CDS gene model=Glyma10g09280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGACGCTTGGCTTAGGAGGATCCAGTGTCGTGGTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGAGAAAAAGGAATTGGAGATGGCACAGTTAGCTATGGAATGGATGATGGTGATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGACTACCCAGAAAAGCCCCCAAGTGTTCGGTTTCATTCACGAGTCAACATGACTTGTGTTAATCATGAAACTGGAGTGGTATCATTTATAATTTTTCACATGCTTTCATTTTATAAATATCTTTGTGCAGTGCATGCTGGGACATATAAAATGTGCTAA
Predicted protein sequences of Glyma10g09280
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma10g09280.1 sequence type=predicted peptide gene model=Glyma10g09280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MTLGLGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRVNMTCVNHETGVVEPKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF*
>Glyma10g09280.2 sequence type=predicted peptide gene model=Glyma10g09280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MTLGLGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRVNMTCVNHETGVVSFIIFHMLSFYKYLCAVHAGTYKMC*