Glyma10g08840 - SoyBase

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Report for Sequence Feature Glyma10g08840

Feature Type:	gene_model
Chromosome:	Gm10
Start:	7723976
stop:	7726538
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g08840

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G11570	AT	Annotation by Michelle Graham. TAIR10: TRICHOME BIREFRINGENCE-LIKE 8 \| chr3:3645540-3647328 REVERSE LENGTH=427	SoyBase	E_val: 6.00E-173	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
PTHR13533	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR13533:SF3	Panther	gb def: unknown protein [takifugu rubripes]	JGI		ISS
PF03005	PFAM	Arabidopsis proteins of unknown function	JGI		ISS
UniRef100_Q9CAX1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein trichome birefringence-like 8 n=2 Tax=Arabidopsis thaliana RepID=Q9CAX1_ARATH	SoyBase	E_val: 3.00E-170	ISS
UniRef100_UPI000233D0F7	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D0F7 related cluster n=1 Tax=unknown RepID=UPI000233D0F7	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g08840

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g08840

Paralog	Evidence	Comments
Glyma02g36101	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g08840 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g076000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g08840

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g08840

Limit To All Plant Sequences

>Glyma10g08840.2   sequence type=CDS   gene model=Glyma10g08840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATTCGCCACTCACCGGAGGCTGCGATTATTCCAGAGGCCGCTGGGTGTGGGATGAAACCTACCCTCGTCAATTGTACGGCGAAAACTGTCCGTTTCTCGACCCCGGATTCCGGTGCCGCCGAAACGGACGGAAAAATGAGAGGTTTCGTAAATGGAGATGGCAACCTGATGACTGTGACATTCCCCGGTTCAATGCCAGTGACCTCCTAGAGAGGAATCGCAATGGACGCATTGTGTTTGCGGGTGATTCCGTGGGGAGAAACCAATGGGAGTCTTTGCTATGCATGCTGACACAAGGGGTTTCTAATCTCTCCAATATATATGAAGTGAATGGAAACCCCATAAGCAAACACAAGGGTTTTCTGGTAATGAGGTTTCAGGAATACAACCTGACAGTGGAGTACTACAGGACACCCTTCTTGTGTGTTATAGGTCGTCCACCACAAAACTCATCAAGTAATGTCCGAAGTACTATCAGGCTTGACGAGTTGCACTGGTATTTTAATAAATGGGTAGAAGCAGATGTTCTTGTTTTCAACTCTGGGCATTGGTGGAACCCAGACAAAACTATCAAGTTGGGAATCTACTTCCAGGAAGGAGGGAGGGTAAACAAGACGATGAACGTGAAAGAAGCATTTAGGAGATCCCTACAGACATGGAAATCATGGACATTGCATAATCTCGATCCTAGGAGTTTCGTCTTCTTTCGTAGCTATTCCTCCGTTCATTTCAGGAATGGCACGTGGAATGATGGAGGAGAGTGTGACATGGAAACAGAGCCAGAAAATGACCCTACAAAACTTGAAATTGAACCATATTATAACATATTTGTTTCTGGTGTTGTCAAACAGATGCAACACGAGAGCAGGAAAGTCCACTTTTTGAACATCACATATCTTTCAGAGTTGAGGAAAGACGGTCACCCTTCCAAGTACCGGGAACCGGGCACTCCACCTGATGCCCCACAGGATTGCAGCCACTGGTGCTTACCAGGGGTGCCAGACACGTGGAATGAACTTCTCTATGCTCAACTTCTATCTGAGAAATTTGGCATCAACAAATTTTTTCCAGAAAGAGGATAA

Predicted protein sequences of Glyma10g08840

Limit To All Plant Sequences

>Glyma10g08840.2   sequence type=predicted peptide   gene model=Glyma10g08840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
NSPLTGGCDYSRGRWVWDETYPRQLYGENCPFLDPGFRCRRNGRKNERFRKWRWQPDDCDIPRFNASDLLERNRNGRIVFAGDSVGRNQWESLLCMLTQGVSNLSNIYEVNGNPISKHKGFLVMRFQEYNLTVEYYRTPFLCVIGRPPQNSSSNVRSTIRLDELHWYFNKWVEADVLVFNSGHWWNPDKTIKLGIYFQEGGRVNKTMNVKEAFRRSLQTWKSWTLHNLDPRSFVFFRSYSSVHFRNGTWNDGGECDMETEPENDPTKLEIEPYYNIFVSGVVKQMQHESRKVHFLNITYLSELRKDGHPSKYREPGTPPDAPQDCSHWCLPGVPDTWNELLYAQLLSEKFGINKFFPERG*

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