Glyma10g08710 - SoyBase

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Report for Sequence Feature Glyma10g08710

Feature Type:	gene_model
Chromosome:	Gm10
Start:	7622631
stop:	7640231
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g08710

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G11540	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr3:3632842-3637547 FORWARD LENGTH=914	SoyBase	E_val: 0	ISS
GO:0000956	GO-bp	Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process	SoyBase	N/A	ISS
GO:0006346	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006396	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA processing	SoyBase	N/A	ISS
GO:0009736	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinin mediated signaling pathway	SoyBase	N/A	ISS
GO:0009740	GO-bp	Annotation by Michelle Graham. GO Biological Process: gibberellic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009938	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of gibberellic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0016246	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA interference	SoyBase	N/A	ISS
GO:0022402	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell cycle process	SoyBase	N/A	ISS
GO:0043687	GO-bp	Annotation by Michelle Graham. GO Biological Process: post-translational protein modification	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:2000377	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of reactive oxygen species metabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0016262	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein N-acetylglucosaminyltransferase activity	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
KOG4626	KOG	O-linked N-acetylglucosamine transferase OGT	JGI		ISS
PTHR23083	Panther	O-LINKED N-ACETYLGLUCOSAMINE TRANSFERASE, OGT	JGI		ISS
PTHR23083:SF181	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00515	PFAM	Tetratricopeptide repeat	JGI		ISS
UniRef100_B9SX16	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: O-linked n-acetylglucosamine transferase, ogt, putative n=1 Tax=Ricinus communis RepID=B9SX16_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1L9F7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L9F7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g08710

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g08710

Paralog	Evidence	Comments
Glyma02g36210	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g08710 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g075300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g08710

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g08710

Limit To All Plant Sequences

>Glyma10g08710.1   sequence type=CDS   gene model=Glyma10g08710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTGGACGGAAGATAATGATGAGAATAATGGGAGGGAAAAGAAGATGGTTGGGGAAAATGGGTTTTTGATAGTGTCTGAGCCTTCTCCTGCTGGTTCTGGTGGGGATGGGGTTTCGGTGAGTACGAGATATGAAGGGAAGGATGATGTTTTGTTTGCCAACATTCTGCGATCGAGGAACAAATTTGTGGATGCTCTTGCACTATACGAACGCGTGCTGGAGAGTGATGGCGGGAATGTGGAGGCTCTTGTTGGGAAAGGGATATGTTTGCAGATGCAGAATATGGGTAGGCTTGCTTTTGAGAGTTTTGCGGAGGCTATCAGGATGGATCCTCAGAATGCCTGCGCTCTCACACATTGCGGTATTCTTTACAAAGACGAAGGTTGCCTTGTGGAGGCTGCTGAGTCATATCAAAAGGCTTTACAAGTGGATCCTTCATACAAAGCAGCTGCTGAGTGCCTGGCCATTGTTTTAACGGATATTGGTACCAACATAAAGCTTGCAGGAAATACTCAGGAAGGAATTCAAAAATACTTTGAAGCTCTCAAAATAGATCCACACTATGCTCCAGCATATTATAATCTTGGTGTGGTCTATTCTGAAATGATGCAATATGACATGGCCCTCACTTTCTATGAAAAGGCTGCATCAGAGAGGCCTATGTATGCTGAAGCATACTGTAACATGGGTGTAATATATAAAAATCGTGGTGATTTGGAAGCAGCTATTACTTGTTATGAGAGGTGTTTAGCTGTTTCACCTAACTTTGAGATTGCAAAGAATAATATGGCTATAGCTTTGACAGATTTGGGAACAAAGGTTAAATTGGAGGGTGACATCAACCGTGGTGTGGCTTTTTATAAGAAAGCTTTGCATTATAATTGGCATTATGCTGATGCAATGTATAATCTTGGGGTTGCTTATGGTGAGATGCTTAAGTTTGATATGGCTATTGTGTTCTATGAACTTGCCTTCCACTTCAATCCGCATTGTGCGGAAGCTTGTAACAATCTAGGTGTTATATATAAAGATCGTGACAACCTTGACAAAGCAGTGGAATGTTACCAGCTTGCTTTGGGAATCAAACCTAACTTTTCACAGTCATTAAATAACCTTGGCGTTGTATACACTGTCCAGGGTAAAATGGACGCTGCGGCGAGTATGATTGAGAAAGCTATCATTGCAAATCCAACATATGCTGAAGCATACAATAACTTAGGAGTTCTTTACAGGGATGCTGGTGATATCTCTCTAGCAATTAATGCTTATGAGCAATGTCTAAAGATTGATCCTGATTCTCGAAATGCTGGCCAGAACCGTTTACTTGCGATGAATTACATAGATGAAGGAAATGATGACAAACTTTTTGAGGCTCACAGGGACTGGGGTAGGCGATTTATGAGACTGTATCCACAGTTCACATCATGGGACAACTCAAAAGATCCTGAACGGCCTCTTGTGATAGGATATGTCTCTCCTGATTATTTTACACATTCTGTGTCATATTTCATAGAAGCTCCCCTTGTCTATCATGATTATACCAATTATAAAGTGATTGTTTATTCAGCAGTTGTCAAGGCAGATGCAAAAACCATCCGGTTTAGAGAAAAAGTCTTAAAGAAGGGTGGGATCTGGAAAGATATTTATGGAACTGATGAAAAGAAGGTTGCTGACATGGTTAGACAAGATCAAGTTGATATTTTAATAGAACTTACTGGTCACACTGCAAACAATAAGCTGGGAATGCTGGCATGCCGACCTGCTCCAGTTCAGGTGACTTGGATTGGTTATCCCAATACAACAGGATTGCCTACAATTGATTATAGAATAACTGATTCTCGGGCAGACCCTCCCGAAACAAAGCAGAAGCATGTTGAAGAGTTAGTTCGATTACCAGATAGCTTCCTTTGTTACACTCCTTCCCCTGAGGCTGGTCCTGTTTGTCCAACTCCTGCTCTTTCCAATGGCTTTGTTACATTTGGTAGTTTTAACAATCTTGCTAAGATTACACCCAAGGTACTGCAGGTCTGGGCAAAGATACTATGTGCAATTCCAAATTCTCGTCTTGTGGTAAAATGTAAACCGTTTTGCTGTGATAGTGTGAGACAGAGGTTTCTTTCAACACTAGAGAAGTTAGGTCTCGAACCACTACGAGTTGATCTTCTGCCCCTTATTCTTCTTAACCACGATCATATGCAAGCTTATTCTCTAATGGACATCAGTTTGGACACATTTCCATATGCTGGAACAACGACGACTTGTGAATCTTTATACATGGGAGTTCCATGTGTTACAATGGCTGGTTCAGTGCATGCACACAATGTTGGTGTTAGTCTTCTTAGCAAAGTTGGTTTGGGCAATTTGATTGCCAAAAATGAAGATGAATATGTAAAATTGGCCTTGAAGTTGGCTTCTGATATTTCGGCACTACAAAATTTGAGAATGAGTCTTCGAGAGCTCATGTCTAAGTCCCCTCTCTGCGATGGAGCTAAATTTATCCTTGGTCTAGAGTCAACATATAGGCAAATGTGGCGCAGATATTGTAAAGGAGATGTTCCGGCTTTGAAATGCATGGAACTGTTGCAACAACCTGTTTCTTCAAATAACCCATCCAGTAAGAACTCCGAGCCAACAAGGGCCACAAACTCAAGTGAGGGAAGCCCCGAATCTGTCAAGGCCAATGGATTCAGTTCAACTCAGCCACCAAAGCTTAATTTTCTCAATTGCGAAGAAAATGGTGGGTCGTTGAATCACAGTAGTAAGCAAGGGATTGTGGGTTCAAGTTGA

Predicted protein sequences of Glyma10g08710

Limit To All Plant Sequences

>Glyma10g08710.1   sequence type=predicted peptide   gene model=Glyma10g08710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAWTEDNDENNGREKKMVGENGFLIVSEPSPAGSGGDGVSVSTRYEGKDDVLFANILRSRNKFVDALALYERVLESDGGNVEALVGKGICLQMQNMGRLAFESFAEAIRMDPQNACALTHCGILYKDEGCLVEAAESYQKALQVDPSYKAAAECLAIVLTDIGTNIKLAGNTQEGIQKYFEALKIDPHYAPAYYNLGVVYSEMMQYDMALTFYEKAASERPMYAEAYCNMGVIYKNRGDLEAAITCYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINRGVAFYKKALHYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQLALGIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGDISLAINAYEQCLKIDPDSRNAGQNRLLAMNYIDEGNDDKLFEAHRDWGRRFMRLYPQFTSWDNSKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYTNYKVIVYSAVVKADAKTIRFREKVLKKGGIWKDIYGTDEKKVADMVRQDQVDILIELTGHTANNKLGMLACRPAPVQVTWIGYPNTTGLPTIDYRITDSRADPPETKQKHVEELVRLPDSFLCYTPSPEAGPVCPTPALSNGFVTFGSFNNLAKITPKVLQVWAKILCAIPNSRLVVKCKPFCCDSVRQRFLSTLEKLGLEPLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLSKVGLGNLIAKNEDEYVKLALKLASDISALQNLRMSLRELMSKSPLCDGAKFILGLESTYRQMWRRYCKGDVPALKCMELLQQPVSSNNPSSKNSEPTRATNSSEGSPESVKANGFSSTQPPKLNFLNCEENGGSLNHSSKQGIVGSS*

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