Glyma10g08700 - SoyBase

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Report for Sequence Feature Glyma10g08700

Feature Type:	gene_model
Chromosome:	Gm10
Start:	7594072
stop:	7601998
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g08700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G06140	AT	Annotation by Michelle Graham. TAIR10: sorting nexin 1 \| chr5:1856212-1858752 REVERSE LENGTH=402	SoyBase	E_val: 0	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0006896	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi to vacuole transport	SoyBase	N/A	ISS
GO:0007154	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell communication	SoyBase	N/A	ISS
GO:0008333	GO-bp	Annotation by Michelle Graham. GO Biological Process: endosome to lysosome transport	SoyBase	N/A	ISS
GO:0009853	GO-bp	Annotation by Michelle Graham. GO Biological Process: photorespiration	SoyBase	N/A	ISS
GO:0009958	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive gravitropism	SoyBase	N/A	ISS
GO:0010252	GO-bp	Annotation by Michelle Graham. GO Biological Process: auxin homeostasis	SoyBase	N/A	ISS
GO:0016197	GO-bp	Annotation by Michelle Graham. GO Biological Process: endosomal transport	SoyBase	N/A	ISS
GO:0035556	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction	SoyBase	N/A	ISS
GO:0048364	GO-bp	Annotation by Michelle Graham. GO Biological Process: root development	SoyBase	N/A	ISS
GO:0051788	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to misfolded protein	SoyBase	N/A	ISS
GO:0080129	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005771	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: multivesicular body	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0030904	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: retromer complex	SoyBase	N/A	ISS
GO:0043231	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular membrane-bounded organelle	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG2273	KOG	Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins	JGI		ISS
PTHR10555	Panther	SORTING NEXIN	JGI		ISS
PTHR10555:SF65	Panther	PHOX (PX) DOMAIN-CONTAINING PROTEIN	JGI		ISS
PF00787	PFAM	PX domain	JGI		ISS
PF09325	PFAM	Vps5 C terminal like	JGI		ISS
UniRef100_B9SWH8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Sorting nexin 3, putative n=1 Tax=Ricinus communis RepID=B9SWH8_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1L9F5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L9F5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g08700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g08700 not represented in the dataset	Glyma10g08700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g08700

Paralog	Evidence	Comments
Glyma02g36220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g08700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g075200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g08700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g08700

Limit To All Plant Sequences

>Glyma10g08700.2   sequence type=transcript   gene model=Glyma10g08700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAAAAGTCGACCCGCCCCGCCACCCACCATGGGCCCGATCGAATAGTGTAGCCGGCCAAGCCAAACTCCCCCAAACGGCAACCAGTTTCACTCTCTTCTCTTCTCTTCTCTGAAACAAACAAACCACGTTCTTCTCTGCGGTGCCACTGCGACACTCGCTGGCCCCAAAATGACCATCATTAACATGAACCCCCCGGTAATTACAATTCTGCCCTCACTCTAATTCACAAATACCTAGCACCACCCTCACTCCTTTTTTTTTTCCTTCTTCCGAACCTTTTTCTTTTTCTGTGTTTGCATGTTGACGGTTACTTTGCGGTATTATGGAACAACAACAACAGCAGAGAACTCTCTCCGGTTCGTCACAGAGCCCTAGATCTCCGTCTTCGTCGTCGCAACCTTTTCTCTCCGTCTCCGTCACCGATCCCGTTAAGCTCGGCAATGGCGTCCAAGCCTATATCTCCTACCGCGTCATCACCAAAACAAATTTTCCTGAATACCAAGGACCTGAGAAGATTGTCATCCGACGTTACAGTGACTTTGTCTGGTTACGTGATCGCCTTTTTGAGAAGTACAAAGGCATTTTCATTCCCCCTCTTCCAGAGAAAAGTGCTGTAGAGAAATTTCGTTTCAGTGCTGAATTTATTGAAATGAGGCGGCAAGCATTGGATGTATTTGTAAATAGGATAGCATCACATCATGAACTAAAACAAAGTGAGGACCTGAGGTTGTTTTTGCAGGCAGAGGAAGAGACAATGGAACGATTAAGGTCACACGAGACTGGCATATTCAAGAAGAAACCAGCCGATCTAATGCAGATTTTTAAGGATGTGCAATCTAAAGTCAGCGATGTTGTCCTTGGGAAAGAGAAGCCAGTAGAAGAATCAGATCCTGAGTATGAAAAGATGAAACATTACATCTTTGAGCTTGAAAACCACTTGGCTGAAGCTCAAAAGCATGCATACCGTCTTGTGAAGAGGCACAGAGAGTTGGGGCAATCACTGTCTGATTTTGGAAAAGCAGTAAAACTTCTAGGTGCTTCTGAAGGAAATGCTCTTGGGAAAGCGTTCTCTGAACTTGGGATGAAGTCAGAGATTTTATCAGCCAAGTTGCAAAAGGAGGCTCATCAGCTCTTGATGAATTTTGAAGAACCTTTGAAAGATTATGTCCATGCTGTACAATCTATTAAGGCAACAATAGCAGAGAGGGCCAATGCCTTCAGAAGACAATGTGAACTGGCTGAAACAATGAAGCTAAAGGAGATTAATCTTGACAAGCTCATGCTGATTCGATCTGATAAAGTTGCAGAAGCTGAACATGAATATAAAGAGTTGAAGGCAGAGAGTGAACAGGCGACGAAGACATTTGAGACGATTGTGAAACTAATGAATGAAGAGATGGGGCGTTTTCAGGAACAGAAAACATTAGATATGGGGATTGCTTTCCATGAATTTGCCAAAGGGCAGGCACGTCTAGCAAATGGTATTGCAGATGCGTGGAGAAGTTTGCTTCCCAAACTGGAAGCATGTTCCTCCTCGTAGAGAAAGAATTAATCAATGAGTTCTGCAGAGCATAGATAAATTACTCTTTCATGGCTGATTACAGGGGCTACTAGGGTATGGCAAACGCAGATCGCAGCTCGTGTTTTGTAAAAGAGCTTTCGGATTATGTTGTAAAAGATGTGTTTTTTTCTGTCTGGCCGATTTTGTACAAATTTTAAACAAAGTAAAAGGTTACCTATCCGCACTTTTATTTTTTATTTTGCTGCTGTTGTTGCGATATCTCTTGTCTTCCTCTGTTGTATATAGTCACAACGGAATTACATGACAATATGGAAGGCTTTTCTTTAGTCTTTTAGATGAGTCAGCAATACCGTCTTCTCTTAATACATTTTTTATTTATTTGGTATCATCATCTATAATATACAAACAAGGCCCTGACATCCATCGCAGTGCGCACGTGTCGTCCATTCCAGCCCCCAAAT

Coding sequences of Glyma10g08700

Limit To All Plant Sequences

>Glyma10g08700.1   sequence type=CDS   gene model=Glyma10g08700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCATCATTAACATGAACCCCCCGCAGAGAACTCTCTCCGGTTCGTCACAGAGCCCTAGATCTCCGTCTTCGTCGTCGCAACCTTTTCTCTCCGTCTCCGTCACCGATCCCGTTAAGCTCGGCAATGGCGTCCAAGCCTATATCTCCTACCGCGTCATCACCAAAACAAATTTTCCTGAATACCAAGGACCTGAGAAGATTGTCATCCGACGTTACAGTGACTTTGTCTGGTTACGTGATCGCCTTTTTGAGAAGTACAAAGGCATTTTCATTCCCCCTCTTCCAGAGAAAAGTGCTGTAGAGAAATTTCGTTTCAGTGCTGAATTTATTGAAATGAGGCGGCAAGCATTGGATGTATTTGTAAATAGGATAGCATCACATCATGAACTAAAACAAAGTGAGGACCTGAGGTTGTTTTTGCAGGCAGAGGAAGAGACAATGGAACGATTAAGGTCACACGAGACTGGCATATTCAAGAAGAAACCAGCCGATCTAATGCAGATTTTTAAGGATGTGCAATCTAAAGTCAGCGATGTTGTCCTTGGGAAAGAGAAGCCAGTAGAAGAATCAGATCCTGAGTATGAAAAGATGAAACATTACATCTTTGAGCTTGAAAACCACTTGGCTGAAGCTCAAAAGCATGCATACCGTCTTGTGAAGAGGCACAGAGAGTTGGGGCAATCACTGTCTGATTTTGGAAAAGCAGTAAAACTTCTAGGTGCTTCTGAAGGAAATGCTCTTGGGAAAGCGTTCTCTGAACTTGGGATGAAGTCAGAGATTTTATCAGCCAAGTTGCAAAAGGAGGCTCATCAGCTCTTGATGAATTTTGAAGAACCTTTGAAAGATTATGTCCATGCTGTACAATCTATTAAGGCAACAATAGCAGAGAGGGCCAATGCCTTCAGAAGACAATGTGAACTGGCTGAAACAATGAAGCTAAAGGAGATTAATCTTGACAAGCTCATGCTGATTCGATCTGATAAAGTTGCAGAAGCTGAACATGAATATAAAGAGTTGAAGGCAGAGAGTGAACAGGCGACGAAGACATTTGAGACGATTGTGAAACTAATGAATGAAGAGATGGGGCGTTTTCAGGAACAGAAAACATTAGATATGGGGATTGCTTTCCATGAATTTGCCAAAGGGCAGGCACGTCTAGCAAATGGTATTGCAGATGCGTGGAGAAGTTTGCTTCCCAAACTGGAAGCATGTTCCTCCTCGTAG

>Glyma10g08700.2   sequence type=CDS   gene model=Glyma10g08700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACAACAACAACAGCAGAGAACTCTCTCCGGTTCGTCACAGAGCCCTAGATCTCCGTCTTCGTCGTCGCAACCTTTTCTCTCCGTCTCCGTCACCGATCCCGTTAAGCTCGGCAATGGCGTCCAAGCCTATATCTCCTACCGCGTCATCACCAAAACAAATTTTCCTGAATACCAAGGACCTGAGAAGATTGTCATCCGACGTTACAGTGACTTTGTCTGGTTACGTGATCGCCTTTTTGAGAAGTACAAAGGCATTTTCATTCCCCCTCTTCCAGAGAAAAGTGCTGTAGAGAAATTTCGTTTCAGTGCTGAATTTATTGAAATGAGGCGGCAAGCATTGGATGTATTTGTAAATAGGATAGCATCACATCATGAACTAAAACAAAGTGAGGACCTGAGGTTGTTTTTGCAGGCAGAGGAAGAGACAATGGAACGATTAAGGTCACACGAGACTGGCATATTCAAGAAGAAACCAGCCGATCTAATGCAGATTTTTAAGGATGTGCAATCTAAAGTCAGCGATGTTGTCCTTGGGAAAGAGAAGCCAGTAGAAGAATCAGATCCTGAGTATGAAAAGATGAAACATTACATCTTTGAGCTTGAAAACCACTTGGCTGAAGCTCAAAAGCATGCATACCGTCTTGTGAAGAGGCACAGAGAGTTGGGGCAATCACTGTCTGATTTTGGAAAAGCAGTAAAACTTCTAGGTGCTTCTGAAGGAAATGCTCTTGGGAAAGCGTTCTCTGAACTTGGGATGAAGTCAGAGATTTTATCAGCCAAGTTGCAAAAGGAGGCTCATCAGCTCTTGATGAATTTTGAAGAACCTTTGAAAGATTATGTCCATGCTGTACAATCTATTAAGGCAACAATAGCAGAGAGGGCCAATGCCTTCAGAAGACAATGTGAACTGGCTGAAACAATGAAGCTAAAGGAGATTAATCTTGACAAGCTCATGCTGATTCGATCTGATAAAGTTGCAGAAGCTGAACATGAATATAAAGAGTTGAAGGCAGAGAGTGAACAGGCGACGAAGACATTTGAGACGATTGTGAAACTAATGAATGAAGAGATGGGGCGTTTTCAGGAACAGAAAACATTAGATATGGGGATTGCTTTCCATGAATTTGCCAAAGGGCAGGCACGTCTAGCAAATGGTATTGCAGATGCGTGGAGAAGTTTGCTTCCCAAACTGGAAGCATGTTCCTCCTCGTAG

Predicted protein sequences of Glyma10g08700

Limit To All Plant Sequences

>Glyma10g08700.1   sequence type=predicted peptide   gene model=Glyma10g08700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTIINMNPPQRTLSGSSQSPRSPSSSSQPFLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQALDVFVNRIASHHELKQSEDLRLFLQAEEETMERLRSHETGIFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESDPEYEKMKHYIFELENHLAEAQKHAYRLVKRHRELGQSLSDFGKAVKLLGASEGNALGKAFSELGMKSEILSAKLQKEAHQLLMNFEEPLKDYVHAVQSIKATIAERANAFRRQCELAETMKLKEINLDKLMLIRSDKVAEAEHEYKELKAESEQATKTFETIVKLMNEEMGRFQEQKTLDMGIAFHEFAKGQARLANGIADAWRSLLPKLEACSSS*

>Glyma10g08700.2   sequence type=predicted peptide   gene model=Glyma10g08700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEQQQQQRTLSGSSQSPRSPSSSSQPFLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQALDVFVNRIASHHELKQSEDLRLFLQAEEETMERLRSHETGIFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESDPEYEKMKHYIFELENHLAEAQKHAYRLVKRHRELGQSLSDFGKAVKLLGASEGNALGKAFSELGMKSEILSAKLQKEAHQLLMNFEEPLKDYVHAVQSIKATIAERANAFRRQCELAETMKLKEINLDKLMLIRSDKVAEAEHEYKELKAESEQATKTFETIVKLMNEEMGRFQEQKTLDMGIAFHEFAKGQARLANGIADAWRSLLPKLEACSSS*

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