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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G36305 | AT | Annotation by Michelle Graham. TAIR10: farnesylated protein-converting enzyme 2 | chr2:15214607-15216449 FORWARD LENGTH=311 | SoyBase | E_val: 3.00E-123 | ISS |
| GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
| GO:0016485 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein processing | SoyBase | N/A | ISS |
| GO:0034613 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular protein localization | SoyBase | N/A | ISS |
| GO:0080120 | GO-bp | Annotation by Michelle Graham. GO Biological Process: CAAX-box protein maturation | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0004175 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: endopeptidase activity | SoyBase | N/A | ISS |
| KOG4130 | KOG | Prenyl protein protease | JGI | ISS | |
| PTHR13046 | Panther | PROTEASE U48 CAAX PRENYL PROTEASE RCE1 | JGI | ISS | |
| PF02517 | PFAM | CAAX amino terminal protease family | JGI | ISS | |
| UniRef100_E0Y466 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Farnesylated protein-converting enzyme 2 n=1 Tax=Prunus persica RepID=E0Y466_PRUPE | SoyBase | E_val: 4.00E-138 | ISS |
| UniRef100_UPI000233CF8C | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233CF8C related cluster n=1 Tax=unknown RepID=UPI000233CF8C | SoyBase | E_val: 0 | ISS |
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Glyma10g08320 not represented in the dataset |
Glyma10g08320 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g22010 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g071200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g08320.2 sequence type=transcript gene model=Glyma10g08320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTAACCGTCCTCATTCCTCAAGTAGTCAACCAATGTCCTAAAGAAATAATTCAATTGACCACTTTCCCCCTTCTTGCTCTCTAGGGTTACTACAAGAAGCAGCATCCGCAATGGAGCAAGACGGTGTCGTTTCGCAGCCAGTTGCGTTAATGGCGTGCATAGCAATGGCCCTGTTCTACGTGGCCATCCTCTACGCTCCCACCGTGCTCATTCGTCTCCCACCTCCTCCTTCCTTCAAAGCCTACATGATCCGTCGCTTCCTATGCGCCGTCGTTTCCTCCATTCTCTCACTCTTCATTTCCGCTCTCATCCTCCCCGTGCAAACTAAGGAATCGCGGCACATGTTTGGTGTATTTGGCATCCGGAGGGACCATATTTGGCAGGCTGTGGTTCTTCCTCTTTGCTTGACCTCTCTAATGTATTCTGGGTCTATGTTCCTCAAGTGTCTTCTCTTGCTGGCTTCTTGGAGGCAACACACAAATTCTGGTGCTGCCCTTTCCTTTGATTCCTGTAAATTTGCCTTGCAGAGGTTTCTTGACTGGTTATCTGCGATTTCATCAAATATTTTGGTGTGGCGAAACTATGTTGTGGCACCCCTTACTGAGGAGTTGGTGTTTAGGGCATGCATGATACCTTTACTTCTGTGTGGAGGACTTAAGACATACAGTATTATTCTTCTTTGCCCCATTTTCTTCAGCTTAGCACATTTAAATCATTTCTTGGAGATTTACGCCAAGCAAAACTACAGAATAGTGAAGGCTGCTATGGTTATAGGTCTCCAGCTTGGCTACACTGTTGTCTTTGGGTCATATGCATCTTTTCTTTTCGTTCGAACTGGACACCTTTTAGCTCCCTTAGTTGTGCACATATATTGTAATTTTATGGGACTGCCTGTATTGTATTCGCAGAGAAGTGGGATTGTAAGTGTAACATTCATAATAGGATTCCTGGGCTTCTTGTGGCTTCTTTTCCCAATGACGGGCCCAGAATTGTATAATGATAGAATAGATAACTGCAGTTGTTGGCAAAGGTACTGCACATGGAGAGAAACGATAAGAATAACCCAGATGTAAATGTTACTATCTTTTTTTTGGTGGCGAAGGAAGAGTAAACTAAGAATGATTGAATAAATTCTAGAAGAACACGGTTTCACTCAAAATTGCTAGAAGTTAAAATGAGTTTAACTCAGTTGGTTAAGTAAAATGTGTGTTATAAATTTTCTAATATTGTTTTTAATTCTTACAAATAAAAAATACTTATAAATATCTTATTGTAAGACGAGATCAAACAAGTTCAGTAAAATTCATGCAAATGACTCCATAATACAATAAAAGTGAAGAGGAAGA >Glyma10g08320.3 sequence type=transcript gene model=Glyma10g08320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTAACCGTCCTCATTCCTCAAGTAGTCAACCAATGTCCTAAAGAAATAATTCAATTGACCACTTTCCCCCTTCTTGCTCTCTAGGGTTACTACAAGAAGCAGCATCCGCAATGGAGCAAGACGGTGTCGTTTCGCAGCCAGTTGCGTTAATGGCGTGCATAGCAATGGCCCTGTTCTACGTGGCCATCCTCTACGCTCCCACCGTGCTCATTCGTCTCCCACCTCCTCCTTCCTTCAAAGCCTACATGATCCGTCGCTTCCTATGCGCCGTCGTTTCCTCCATTCTCTCACTCTTCATTTCCGCTCTCATCCTCCCCGTGCAAACTAAGGAATCGCGGCACATGTTTGGTGTATTTGGCATCCGGAGGGACCATATTATTGGGAAAAAGGGTCACTCATTGCTGAATTTTCTGTATGAAACAGTGGCAGGCTGTGGTTCTTCCTCTTTGCTTGACCTCTCTAATGTATTCTGGGTCTATGTTCCTCAAGTGTCTTCTCTTGCTGGCTTCTTGGAGGCAACACACAAATTCTGGTGCTGCCCTTTCCTTTGATTCCTGTAAATTTGCCTTGCAGAGGTTTCTTGACTGGTTATCTGCGATTTCATCAAATATTTTGGTGTGGCGAAACTATGTTGTGGCACCCCTTACTGAGGAGTTGGTGTTTAGGGCATGCATGATACCTTTACTTCTGTGTGGAGGACTTAAGACATACAGTATTATTCTTCTTTGCCCCATTTTCTTCAGCTTAGCACATTTAAATCATTTCTTGGAGATTTACGCCAAGCAAAACTACAGAATAGTGAAGGCTGCTATGGTTATAGGTCTCCAGCTTGGCTACACTGTTGTCTTTGGGTCATATGCATCTTTTCTTTTCGTTCGAACTGGACACCTTTTAGCTCCCTTAGTTGTGCACATATATTGTAATTTTATGGGACTGCCTGTATTGTATTCGCAGAGAAGTGGGATTGTAAGTGTAACATTCATAATAGGATTCCTGGGCTTCTTGTGGCTTCTTTTCCCAATGACGGGCCCAGAATTGTATAATGATAGAATAGATAACTGCAGTTGTTGGCAAAGGTACTGCACATGGAGAGAAACGATAAGAATAACCCAGATGTAAATGTTACTATCTTTTTTTTGGTGGCGAAGGAAGAGTAAACTAAGAATGATTGAATAAATTCTAGAAGAACACGGTTTCACTCAAAATTGCTAGAAGTTAAAATGAGTTTAACTCAGTTGGTTAAGTAAAATGTGTGTTATAAATTTTCTAATATTGTTTTTAATTCTTACAAATAAAAAATACTTATAAATATCTTATTGTAAGACGAGATCAAACAAGTTCAGTAAAATTCATGCAAATGACTCCATAATACAATAAAAGTGAAGAGGAAGA
>Glyma10g08320.1 sequence type=CDS gene model=Glyma10g08320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAACAGTGGCAGGCTGTGGTTCTTCCTCTTTGCTTGACCTCTCTAATGTATTCTGGGTCTATGTTCCTCAAGTGTCTTCTCTTGCTGGCTTCTTGGAGGCAACACACAAATTCTGGTGCTGCCCTTTCCTTTGATTCCTGTAAATTTGCCTTGCAGAGGTTTCTTGACTGGTTATCTGCGATTTCATCAAATATTTTGGTGTGGCGAAACTATGTTGTGGCACCCCTTACTGAGGAGTTGGTGTTTAGGGCATGCATGATACCTTTACTTCTGTGTGGAGGACTTAAGACATACAGTATTATTCTTCTTTGCCCCATTTTCTTCAGCTTAGCACATTTAAATCATTTCTTGGAGATTTACGCCAAGCAAAACTACAGAATAGTGAAGGCTGCTATGGTTATAGGTCTCCAGCTTGGCTACACTGTTGTCTTTGGGTCATATGCATCTTTTCTTTTCGTTCGAACTGGACACCTTTTAGCTCCCTTAGTTGTGCACATATATTGTAATTTTATGGGACTGCCTGTATTGTATTCGCAGAGAAGTGGTACGTGTATCAAGTTGCTTATGGAGTAA >Glyma10g08320.2 sequence type=CDS gene model=Glyma10g08320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGCAAGACGGTGTCGTTTCGCAGCCAGTTGCGTTAATGGCGTGCATAGCAATGGCCCTGTTCTACGTGGCCATCCTCTACGCTCCCACCGTGCTCATTCGTCTCCCACCTCCTCCTTCCTTCAAAGCCTACATGATCCGTCGCTTCCTATGCGCCGTCGTTTCCTCCATTCTCTCACTCTTCATTTCCGCTCTCATCCTCCCCGTGCAAACTAAGGAATCGCGGCACATGTTTGGTGTATTTGGCATCCGGAGGGACCATATTTGGCAGGCTGTGGTTCTTCCTCTTTGCTTGACCTCTCTAATGTATTCTGGGTCTATGTTCCTCAAGTGTCTTCTCTTGCTGGCTTCTTGGAGGCAACACACAAATTCTGGTGCTGCCCTTTCCTTTGATTCCTGTAAATTTGCCTTGCAGAGGTTTCTTGACTGGTTATCTGCGATTTCATCAAATATTTTGGTGTGGCGAAACTATGTTGTGGCACCCCTTACTGAGGAGTTGGTGTTTAGGGCATGCATGATACCTTTACTTCTGTGTGGAGGACTTAAGACATACAGTATTATTCTTCTTTGCCCCATTTTCTTCAGCTTAGCACATTTAAATCATTTCTTGGAGATTTACGCCAAGCAAAACTACAGAATAGTGAAGGCTGCTATGGTTATAGGTCTCCAGCTTGGCTACACTGTTGTCTTTGGGTCATATGCATCTTTTCTTTTCGTTCGAACTGGACACCTTTTAGCTCCCTTAGTTGTGCACATATATTGTAATTTTATGGGACTGCCTGTATTGTATTCGCAGAGAAGTGGGATTGTAAGTGTAACATTCATAATAGGATTCCTGGGCTTCTTGTGGCTTCTTTTCCCAATGACGGGCCCAGAATTGTATAATGATAGAATAGATAACTGCAGTTGTTGGCAAAGGTACTGCACATGGAGAGAAACGATAAGAATAACCCAGATGTAA >Glyma10g08320.3 sequence type=CDS gene model=Glyma10g08320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAACAGTGGCAGGCTGTGGTTCTTCCTCTTTGCTTGACCTCTCTAATGTATTCTGGGTCTATGTTCCTCAAGTGTCTTCTCTTGCTGGCTTCTTGGAGGCAACACACAAATTCTGGTGCTGCCCTTTCCTTTGATTCCTGTAAATTTGCCTTGCAGAGGTTTCTTGACTGGTTATCTGCGATTTCATCAAATATTTTGGTGTGGCGAAACTATGTTGTGGCACCCCTTACTGAGGAGTTGGTGTTTAGGGCATGCATGATACCTTTACTTCTGTGTGGAGGACTTAAGACATACAGTATTATTCTTCTTTGCCCCATTTTCTTCAGCTTAGCACATTTAAATCATTTCTTGGAGATTTACGCCAAGCAAAACTACAGAATAGTGAAGGCTGCTATGGTTATAGGTCTCCAGCTTGGCTACACTGTTGTCTTTGGGTCATATGCATCTTTTCTTTTCGTTCGAACTGGACACCTTTTAGCTCCCTTAGTTGTGCACATATATTGTAATTTTATGGGACTGCCTGTATTGTATTCGCAGAGAAGTGGGATTGTAAGTGTAACATTCATAATAGGATTCCTGGGCTTCTTGTGGCTTCTTTTCCCAATGACGGGCCCAGAATTGTATAATGATAGAATAGATAACTGCAGTTGTTGGCAAAGGTACTGCACATGGAGAGAAACGATAAGAATAACCCAGATGTAA
>Glyma10g08320.1 sequence type=predicted peptide gene model=Glyma10g08320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKQWQAVVLPLCLTSLMYSGSMFLKCLLLLASWRQHTNSGAALSFDSCKFALQRFLDWLSAISSNILVWRNYVVAPLTEELVFRACMIPLLLCGGLKTYSIILLCPIFFSLAHLNHFLEIYAKQNYRIVKAAMVIGLQLGYTVVFGSYASFLFVRTGHLLAPLVVHIYCNFMGLPVLYSQRSGTCIKLLME* >Glyma10g08320.2 sequence type=predicted peptide gene model=Glyma10g08320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEQDGVVSQPVALMACIAMALFYVAILYAPTVLIRLPPPPSFKAYMIRRFLCAVVSSILSLFISALILPVQTKESRHMFGVFGIRRDHIWQAVVLPLCLTSLMYSGSMFLKCLLLLASWRQHTNSGAALSFDSCKFALQRFLDWLSAISSNILVWRNYVVAPLTEELVFRACMIPLLLCGGLKTYSIILLCPIFFSLAHLNHFLEIYAKQNYRIVKAAMVIGLQLGYTVVFGSYASFLFVRTGHLLAPLVVHIYCNFMGLPVLYSQRSGIVSVTFIIGFLGFLWLLFPMTGPELYNDRIDNCSCWQRYCTWRETIRITQM* >Glyma10g08320.3 sequence type=predicted peptide gene model=Glyma10g08320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKQWQAVVLPLCLTSLMYSGSMFLKCLLLLASWRQHTNSGAALSFDSCKFALQRFLDWLSAISSNILVWRNYVVAPLTEELVFRACMIPLLLCGGLKTYSIILLCPIFFSLAHLNHFLEIYAKQNYRIVKAAMVIGLQLGYTVVFGSYASFLFVRTGHLLAPLVVHIYCNFMGLPVLYSQRSGIVSVTFIIGFLGFLWLLFPMTGPELYNDRIDNCSCWQRYCTWRETIRITQM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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