SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G33880 | AT | Annotation by Michelle Graham. TAIR10: homeobox-3 | chr2:14341639-14343597 REVERSE LENGTH=378 | SoyBase | E_val: 4.00E-64 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0008284 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation | SoyBase | N/A | ISS |
| GO:0009735 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cytokinin stimulus | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0009845 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed germination | SoyBase | N/A | ISS |
| GO:0010075 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth | SoyBase | N/A | ISS |
| GO:0010093 | GO-bp | Annotation by Michelle Graham. GO Biological Process: specification of floral organ identity | SoyBase | N/A | ISS |
| GO:0010162 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed dormancy process | SoyBase | N/A | ISS |
| GO:0048440 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carpel development | SoyBase | N/A | ISS |
| GO:0048507 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0043565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding | SoyBase | N/A | ISS |
| PTHR24326 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24326:SF107 | Panther | JGI | ISS | ||
| PF00046 | PFAM | Homeobox domain | JGI | ISS | |
| UniRef100_B8YI24 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: WOX9-like protein n=1 Tax=Phaseolus coccineus RepID=B8YI24_PHACN | SoyBase | E_val: 0 | ISS |
| UniRef100_C6TDQ4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=2 Tax=Magnoliophyta RepID=C6TDQ4_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma10g08030 not represented in the dataset |
Glyma10g08030 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g21860 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g069700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g08030.1 sequence type=CDS gene model=Glyma10g08030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCTTCTAATAGACACTGGCCAAGCATGTTCAAGTCCAAGCCCTGCAGCCCTCACCACCAATGGCAGCATGACATCAACGCCTCCCTCATCTCCACTAGCTGCCACAGAAGCCCTTACTCTTCAGGAGGTGGTGGTTGTGAAGAGAGAAGTCCAGAGCCAAAGCCAAGGTGGAACCCTAAACCTGAGCAAATCAGAATACTGGAGGCTATATTCAACTCTGGAATGGTGAATCCTCCGAGGGATGAGATAAGGAAGATAAGGGCACAGTTGCAAGAGTATGGCCAAGTGGGTGATGCCAATGTCTTCTATTGGTTCCAGAATCGCAAGTCAAGGAGCAAACACAAACTTCGCCATCTCCAAAACTCATCATCAAAGAACATGAACCACCATCACCACATGAATGTTGATCAACAAAATCATACAATTCCCACTAATTCTTCTCTCCCTCAAACCACTACTACTGCACCCTCTTCCTCGTCATCTTCATCGTCTGAGAAATCTTCCCCAAAAGAACTTATAATACCTACCACCAAGGTGTTCTCCATTGGATTCTCCGATGCGGTGCCTAATTCTCCAACAGCTTCTGTAAACCAGACCCGGATTAATGACATCATGCTTCCACCACCACCACCAGTTGAGGCTTTCTTCTTCCCAGTGCAACAACAACATGATGTGCATCATGGAGTAACATCATCATCACAAGGGTTTTGCTTCTCTGAGCTGTCCAATGTTGTTCATGCTCAACAGAACAACGTTGGCCCTTGCACTAGCCTCTTGCTTAGTGAGATCGTAGGTCATGGTGCTGCTTCTGCTGGTGCCTCAAAGAAAGACAAGTCTCAGATGAAAATAATGCACCAGCCCTCACTGCTTAATTTCTGTGTCACTACTCCAACAACAGCAACAACATCAACTCCTACTACTACCACCACTGTTGTTGTACCTCCCATCACTACTACCTCTACTACTGTTTCATCCCCCCTCATGCCTCAGCTTCAAGGTATTGGAGATCCAGGTGGTGCGGCGAGATCAACGGTGTTCATTAACGATGTGGCATTCGAGGTAGCTGTGGGACCCTTCAACGTGCGTGAAGCTTTTGGAGATGATGTTGTGCTCATCCATGCCAGCAGTGGTCAACCTGTGCTAACAAACCAATGGGGTCTCACTCTTCATTCACTCCAGCATGGCGCATGTTATTATTTGATATAG
>Glyma10g08030.1 sequence type=predicted peptide gene model=Glyma10g08030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASSNRHWPSMFKSKPCSPHHQWQHDINASLISTSCHRSPYSSGGGGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHLQNSSSKNMNHHHHMNVDQQNHTIPTNSSLPQTTTTAPSSSSSSSSEKSSPKELIIPTTKVFSIGFSDAVPNSPTASVNQTRINDIMLPPPPPVEAFFFPVQQQHDVHHGVTSSSQGFCFSELSNVVHAQQNNVGPCTSLLLSEIVGHGAASAGASKKDKSQMKIMHQPSLLNFCVTTPTTATTSTPTTTTTVVVPPITTTSTTVSSPLMPQLQGIGDPGGAARSTVFINDVAFEVAVGPFNVREAFGDDVVLIHASSGQPVLTNQWGLTLHSLQHGACYYLI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
