Glyma10g07820 - SoyBase

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Report for Sequence Feature Glyma10g07820

Feature Type:	gene_model
Chromosome:	Gm10
Start:	6619408
stop:	6623546
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g07820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G52880	AT	Annotation by Michelle Graham. TAIR10: monodehydroascorbate reductase 1 \| chr3:19601477-19604366 REVERSE LENGTH=434	SoyBase	E_val: 0	ISS
GO:0006094	GO-bp	Annotation by Michelle Graham. GO Biological Process: gluconeogenesis	SoyBase	N/A	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0018119	GO-bp	Annotation by Michelle Graham. GO Biological Process: peptidyl-cysteine S-nitrosylation	SoyBase	N/A	ISS
GO:0042744	GO-bp	Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0005782	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisomal matrix	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016656	GO-mf	Annotation by Michelle Graham. GO Molecular Function: monodehydroascorbate reductase (NADH) activity	SoyBase	N/A	ISS
GO:0050660	GO-mf	Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding	SoyBase	N/A	ISS
KOG1336	KOG	Monodehydroascorbate/ferredoxin reductase	JGI		ISS
PTHR22912	Panther	DISULFIDE OXIDOREDUCTASE	JGI		ISS
PTHR22912:SF37	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00070	PFAM	Pyridine nucleotide-disulphide oxidoreductase	JGI		ISS
PF07992	PFAM	Pyridine nucleotide-disulphide oxidoreductase	JGI		ISS
UniRef100_H2EIY4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Monodehydroascorbate reductase n=1 Tax=Medicago sativa RepID=H2EIY4_MEDSA	SoyBase	E_val: 0	ISS
UniRef100_UPI0001D62E8D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0001D62E8D related cluster n=1 Tax=unknown RepID=UPI0001D62E8D	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g07820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g07820 not represented in the dataset	Glyma10g07820 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g07820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g067500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g07820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g07820

Limit To All Plant Sequences

>Glyma10g07820.1   sequence type=CDS   gene model=Glyma10g07820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAAAACCTTCAAATACATCATCCTCGGTGGAGGAGTTTCCGCTGGTTATGCGGCGAGGGAGTTTGCCAAACAGGGCGTTAAGCCAGGGGAGTTGGCTATCATTTCGAAAGAAGCGGTAGCACCTTATGAACGTCCTGCTCTGAGCAAGGCTTACCTTTTTCCAGAGTCCCCTGCTAGACTTCCTGGGTTCCATGTCTGTGTTGGAAGTGGAGGAGAAAGGTTGCTTCCTGAGTGGTACACAGAGAAAGGGATAGAGTTAATTCTTAGCACAGAAATAGTAAAGGTAGACCTTGCTGCAAAATCTCTGATCAGTGCTGGAGGAGAAACATTCAGTTATCAGATTTTGATTGTTGCAACTGGCTCAACAGTTATAAGGCTGACAGATTTCGGTGTAGAAGGAGCTGATGCGAAAAACATCTTTTATTTGAGGGAGGTTGACGATGCTGACAAATTGTACGCAGCAATCAAGGCAAAGAAGAATGGGAAAGCTGTGGTTGTTGGGGGAGGATACATTGGTCTGGAGCTTAGTGCAGTGTTGAAACTCAACAATATTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTATGCCACGACTTTTTACGGCTGGTATAGCTGAATTCTATGAGGGATATTACGCAAATAAGGGTGTAAATATCATTAAAGGAACTGTTGCTGTTGGATTCACTTCTAATTCTGATGGAGAGGTAAAAGAAGTCAAACTAAAGGATGGCAGGGTCCTGGAAGCTGATATTGTTGTTGTTGGTGTTGGAGGAAGGCCTCAAACAGTCTTAGTCAAAGGGCAGGTTGAAGAGGAGAAGGGTGGAATCAAGACCGATGCTTTCTTCAAAACTAATCTCTCCGATGTATATGCTGTTGGTGATGTTGCTACTTTCCCTTTGAAATTATACGGTGAATTGAGAAGAGTTGAACATGTTGATCATTCTCGCAAATCGGCTGAACAGGCTGTGAAGGCCATCAAGGCAGCTGAGGAAGGAAAAACAGTTGAGGAGTATGATTACCTTCCATACTTCTATTCCCGTTCATTCGATCTGTCTTGGCAATTCTATGGCGACAATGTCGGCGACACAGTGCTATTCGGAGACAACAATCCTGCGTCTTCAAAGCCAAAGTTTGGGACATACTGGATTAAAGACGGGAAAGTTGTCGGGGTCTTTCTGGAAGGTGGAACTCCTGAAGAAAACCAGGCTATTGCTAAAGTTGCTAAGGTCCAGCCTCCGGTTGCGGATGTAAATCAACTTGCTAAGGAAGGCCTTTCCTTTGCTAGTAAAATATAA

Predicted protein sequences of Glyma10g07820

Limit To All Plant Sequences

>Glyma10g07820.1   sequence type=predicted peptide   gene model=Glyma10g07820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKTFKYIILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPESPARLPGFHVCVGSGGERLLPEWYTEKGIELILSTEIVKVDLAAKSLISAGGETFSYQILIVATGSTVIRLTDFGVEGADAKNIFYLREVDDADKLYAAIKAKKNGKAVVVGGGYIGLELSAVLKLNNIDVTMVYPEPWCMPRLFTAGIAEFYEGYYANKGVNIIKGTVAVGFTSNSDGEVKEVKLKDGRVLEADIVVVGVGGRPQTVLVKGQVEEEKGGIKTDAFFKTNLSDVYAVGDVATFPLKLYGELRRVEHVDHSRKSAEQAVKAIKAAEEGKTVEEYDYLPYFYSRSFDLSWQFYGDNVGDTVLFGDNNPASSKPKFGTYWIKDGKVVGVFLEGGTPEENQAIAKVAKVQPPVADVNQLAKEGLSFASKI*

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