Glyma10g07800 - SoyBase

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Report for Sequence Feature Glyma10g07800

Feature Type:	gene_model
Chromosome:	Gm10
Start:	6588699
stop:	6592052
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g07800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G09970	AT	Annotation by Michelle Graham. TAIR10: Calcineurin-like metallo-phosphoesterase superfamily protein \| chr3:3063813-3065337 FORWARD LENGTH=309	SoyBase	E_val: 9.00E-93	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG0374	KOG	Serine/threonine specific protein phosphatase PP1, catalytic subunit	JGI		ISS
PTHR11668	Panther	SERINE/THREONINE PROTEIN PHOSPHATASE	JGI		ISS
PTHR11668:SF93	Panther	CALCINEURIN-LIKE PHOSPHOESTERASE FAMILY PROTEIN	JGI		ISS
UniRef100_C6ZS09	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calcineurin-like phosphoesterase n=1 Tax=Glycine max RepID=C6ZS09_SOYBN	SoyBase	E_val: 3.00E-139	ISS
UniRef100_I1L989	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L989_SOYBN	SoyBase	E_val: 7.00E-177	ISS

Expression Patterns of Glyma10g07800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g07800

Paralog	Evidence	Comments
Glyma13g21640	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g07800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g067300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g07800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g07800

Limit To All Plant Sequences

>Glyma10g07800.1   sequence type=CDS   gene model=Glyma10g07800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGAGCCCCCAAAACCGAGGCTAGTCATCTGCATGGGCGACATCCACGGCTTCATAACAAAGCTCCAAATCCTCTGGTCGAACCTCGAAGCCAGCCTCGACCGATCCGAATTCGAAACCGCAACCCTAATCTTCCTCGGCGATTACTGCGACCGAGGCCCCGGCACCCGCCACCTCATCGAGTTCCTCGTTTCTCTACCCTCCCGTTACCTTCTCGGAGGGGTGCTTCAAGGGAGAAGGTGGAGTGGGAAGATAAAGGTGAAGTTTAATACGGTTAAGGGGACGGAGTATCAGGGTTCCATTTACGACGCTGGACCCACCTTTGAGTCCTATGGAGTTCTCCATGCCTCTGCTGATTTGGTTAAGGCTGTTCCTGATGATCACAAGAAATTTCTTGCTGATTTGGTTTGGGTCCATGAAGAGGACGATGTCTTTGTGAACACTGATGATGGAGTTAAATGCTGCAAGTTGATTGCTGTTCATGCTGGTTTGGAGAAAGGAAAAGATTTGAAAGAGCAGTTAAAACTTTTGAAAGCTCGGGATACTCGGGTGCCTAAGGTGGAGGCTCTAAGTGGGAGAAAGAGTGTATGGGATATCCCAGAGAAAACATATATATTGAGAATAAAGTATTTTAAAGTGTCATCGCTTTTTCACTTTTTCAGAAAAGGCCAAAAACATTTGATCCGTCACCATGGGAAACTCCACGTAGAAGGCTTAAGGCTGATCATTGATGAAGGTGGAGGATATAAAGATAGACCAGTGGCTGCAATTATTCTTCCCTCAATGAAGATTATTCGTGATACCGATGTATTAGCAAAATAG

Predicted protein sequences of Glyma10g07800

Limit To All Plant Sequences

>Glyma10g07800.1   sequence type=predicted peptide   gene model=Glyma10g07800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSEPPKPRLVICMGDIHGFITKLQILWSNLEASLDRSEFETATLIFLGDYCDRGPGTRHLIEFLVSLPSRYLLGGVLQGRRWSGKIKVKFNTVKGTEYQGSIYDAGPTFESYGVLHASADLVKAVPDDHKKFLADLVWVHEEDDVFVNTDDGVKCCKLIAVHAGLEKGKDLKEQLKLLKARDTRVPKVEALSGRKSVWDIPEKTYILRIKYFKVSSLFHFFRKGQKHLIRHHGKLHVEGLRLIIDEGGGYKDRPVAAIILPSMKIIRDTDVLAK*

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