Glyma10g07620 - SoyBase

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Report for Sequence Feature Glyma10g07620

Feature Type:	gene_model
Chromosome:	Gm10
Start:	6371778
stop:	6374970
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g07620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G03720	AT	Annotation by Michelle Graham. TAIR10: heat shock transcription factor A3 \| chr5:971913-973683 REVERSE LENGTH=412	SoyBase	E_val: 2.00E-97	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
KOG0627	KOG	Heat shock transcription factor	JGI		ISS
PTHR10015	Panther	HEAT SHOCK TRANSCRIPTION FACTOR	JGI		ISS
PTHR10015:SF7	Panther	HEAT SHOCK TRANSCRIPTION FACTOR	JGI		ISS
PF00447	PFAM	HSF-type DNA-binding	JGI		ISS
UniRef100_B9SRG8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SRG8_RICCO	SoyBase	E_val: 3.00E-138	ISS
UniRef100_UPI000233CF71	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233CF71 related cluster n=1 Tax=unknown RepID=UPI000233CF71	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g07620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g07620

Paralog	Evidence	Comments
Glyma13g21490	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g07620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g066100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g07620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g07620

Limit To All Plant Sequences

>Glyma10g07620.2   sequence type=CDS   gene model=Glyma10g07620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACCCCAACGATGGCAACAACTCTCCCAGTCCCAAGCCCTTGGAGATGGTCAACCCGGTTCCTCCGTTTCTTTCTAAGACCTTCGACCTCGTCGACGCCCCGACTCTCGACCCGATCATCTCGTGGAACTCCACGGGCCTCAGCTTCGTCGTGTGGGACCCTCTCGAGTTCGCGAGAATTGTCCTTCCTCGACATTTCAAGCACAACAACTTTTCCAGCTTCGTTCGCCAGCTCAATACTTATGGATTCCGCAAGATTGACACAGACAAGTGGGAGTTTTTCAACGAAGCTTTCCAGCGAGGGAAGAAGCACTTGCTGAAGAACATCCAAAGGCGCAGGTCATCTCAATCCCAGCCGGTTGGTAGCTATATTGGAATCGGATCTTCTACCGAGGCAGGGGGGTCAGAGGTTGAGATTGAGATAGAAAGGCTTAGGAAAGAAAAGACTATGCTGATGGAAGAGGTGGTTGATTTGCAGCAAGAGCAACGAAGAACAGCTCACCACGCAGGAGAAGTGAATCTAAGGCTCCAATCTGCAGAACAAAGGCAGAAACAAATGGTTTCTTTCCTTGCCAAGTTGATCCAAAACCCCGCCTTTTTAGCCCGCCTTAGACATAAGAAGGAGCAAAAGGAAATAGATTCTCCAAGAGTGGTAAGGAAGTTTGTCAAACAGCACCATGAAACTGGAACAACAACAACAGCAGAAACTCTCCAAGAAGGGCAGATAGTGAGGTATCAACCTGATTGGAGAAATATAGCCATGTCTTCTGAAACTCCAAAACTAAGTTCAGTTTCCATTGAACAATCTCCTCACTACCTTTCACAGGGTTTGGCAGGAGAAATGAGTGTAGTAGGTGCAGAAGACCTTACTGCTCAAATTGACAATATTGTATCAGATGATTTGGCTGCAGTGCACGGGATTACGCCGTCTCAAGAAATGATGATTGGAGAAGGATCATCTACCTTTGGAGCTGAAGACCCCCTCTTCAAAGGGAAGAGTGTCATGAGTCCAATTCTAGAAGTTCCTCCAGAGTATTTTCCTTCCTTCCCAGAGGGTTTGACCAAGGAGAAGAAAGACTTTCAAGATTTTTCTGCTCTTGGAACTGAAGGCATGATAAAGCTAGAAGATATATGGGACTCTGGCCTCAATGTTAGTGGTGCTGCTTTAAGCAGTGGGAATGAGCTGTGGGGCAATCATGTCAACTATGAAGAGTTTCCACAATTTGGAGTCACAAGTGGTATGTCTGACTCAGATATCTGGGATATTGGCTTAGGAAGTTTTGGAATTGATACGTGGCCAACTGATGAACCTTCTCTTGGTGAAACAGATGGTCAATCTGGTCAGCCAAATGAAGATAGGTCTAAGAATTTTGATCCATAG

Predicted protein sequences of Glyma10g07620

Limit To All Plant Sequences

>Glyma10g07620.2   sequence type=predicted peptide   gene model=Glyma10g07620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNPNDGNNSPSPKPLEMVNPVPPFLSKTFDLVDAPTLDPIISWNSTGLSFVVWDPLEFARIVLPRHFKHNNFSSFVRQLNTYGFRKIDTDKWEFFNEAFQRGKKHLLKNIQRRRSSQSQPVGSYIGIGSSTEAGGSEVEIEIERLRKEKTMLMEEVVDLQQEQRRTAHHAGEVNLRLQSAEQRQKQMVSFLAKLIQNPAFLARLRHKKEQKEIDSPRVVRKFVKQHHETGTTTTAETLQEGQIVRYQPDWRNIAMSSETPKLSSVSIEQSPHYLSQGLAGEMSVVGAEDLTAQIDNIVSDDLAAVHGITPSQEMMIGEGSSTFGAEDPLFKGKSVMSPILEVPPEYFPSFPEGLTKEKKDFQDFSALGTEGMIKLEDIWDSGLNVSGAALSSGNELWGNHVNYEEFPQFGVTSGMSDSDIWDIGLGSFGIDTWPTDEPSLGETDGQSGQPNEDRSKNFDP*

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