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Report for Sequence Feature Glyma10g07601

Feature Type:gene_model
Chromosome:Gm10
Start:6336194
stop:6353470
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g07601
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G36490AT Annotation by Michelle Graham. TAIR10: demeter-like 1 | chr2:15308259-15314272 REVERSE LENGTH=1393 SoyBaseE_val: 0ISS
GO:0006281GO-bp Annotation by Michelle Graham. GO Biological Process: DNA repair SoyBaseN/AISS
GO:0006284GO-bp Annotation by Michelle Graham. GO Biological Process: base-excision repair SoyBaseN/AISS
GO:0006306GO-bp Annotation by Michelle Graham. GO Biological Process: DNA methylation SoyBaseN/AISS
GO:0006342GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing SoyBaseN/AISS
GO:0031936GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of chromatin silencing SoyBaseN/AISS
GO:0080111GO-bp Annotation by Michelle Graham. GO Biological Process: DNA demethylation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003906GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA-(apurinic or apyrimidinic site) lyase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0019104GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA N-glycosylase activity SoyBaseN/AISS
PTHR10359Panther A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III JGI ISS
PTHR10359:SF3Panther A/G-SPECIFIC ADENINE GLYCOSYLASE JGI ISS
PF00730PFAM HhH-GPD superfamily base excision DNA repair protein JGI ISS
UniRef100_F6KFZ2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Repressor of gene silencing 1 n=1 Tax=Gossypium hirsutum RepID=F6KFZ2_GOSHI SoyBaseE_val: 0ISS
UniRef100_UPI000233CE09UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233CE09 related cluster n=1 Tax=unknown RepID=UPI000233CE09 SoyBaseE_val: 0ISS

Expression Patterns of Glyma10g07601
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g07601 not represented in the dataset
Glyma10g07601 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g07601
ParalogEvidenceComments
Glyma13g21460 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g07601 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g065900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g07601
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g07601
>Glyma10g07601.1   sequence type=CDS   gene model=Glyma10g07601   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGTTGGGGAAATGGACAGAAAGGAGACACAAGTTGAGGTTCCTTGGAGCCCCGGCCCACCTATTAAGCCAGTTCCTATGAAACCAGTGCCGATCTACATGCCTGAGGAGAGAAACCAAATGGATCATCTTGCAAATGGAGCAGTTGCATGTGCTGAATTTTCACTTGGCCAAGACAAAATTGGTGGGTCAGGTGATGGGTCAAATGTTGCCGGTTACAGTGGCAAAACTTGTGAACAGATAGTTTCGGATGCTGTTTCCAGCTACAGAAAACTTGGGTTCTGTGAGCAACTGTTGGCGGTTGAAGCTGAATCGAGGAACATCAGTGTGACACAAGGGAATAATGATGGATTGAAGAATCCGTTTGTTCCTCCACTCGTCCTTGATAATGTCCTAGACCCTCAGGAAACATACATTGCTTGCTGTAGCATGAAATCTTCACAGGATACCTCATATATACTTGACAATGCCAACAAAGAAGAAAGCAGACAAATAGCATCAATGCAAGTCAATATGGAAGAAAAGGATCCAGGAAGGGAAGAGAGAAATGTCACTGCCAATAAGCTTGACAATAATGTAGCGCCAAACAGCAAAGAACTCTGTGACCCTGCCATGGAATTTGCTGCTGTTTCTTCACCAGTGAAGGAGAATCACAACCCAGATAATGGAAGCAGTCATGATACTGATCTTAATAAAACACCACAACAAAAACCAAGGAGAAGAAAGCACCGTCCCAAGGTCATCAAAGAAGGCAAACCCAAAAGAACTCGGAAGCCAGCTACCCCAAAGCCTGTTCAATCAAAAGAAAAGCAACCTGTCAAGAGGAAGTATGTGAGAAAGAATGCACTGAACAAGACTTCTACTCCTCCAACAGAAGAGACTGGGGAATTGACTAAAGAAATGTCTTGTAAAAGGTCCTTAAATTTCGACATAGGAACAACATATGAAAGTTCTGCTGCCATAGAAAATACAAGAACGCTATTGGGAAAAGAAAATGGTGTTCTTGTACAAGAAACAAATGTAGGTCCTGCATTTGATCTAAACACTTCCATGAAGCAGGCATCAAACAGTTACATGTCACTACCAGAAGACACACAAGCCCTAAATACATCTTCGGGAAGAAAAAGCTCAGGGACAAAGCCAGAGGAAAACCCACCTCCGAAGAGGAAGTATGTGAAAAGGAAAGGAGTGAACAAGACTTCTGCTCCTCCAATAGAAGTTCCTGGAAATTTGACTGAAGAAACAACGTCTGCATCTGCCCAAACATCATGCACAGGGTCCATAAATTTTGATGAAAGAGCAAGTGAACAAAGTTATGCAGTCAAAGAGAATCCAACTGGGCATCCAGGCAGTGAAATTGGTGTAGTAATGAAGGAAATGAATGTGGGCCTTGCCTATGATTTAAACACTTCCATGAAGCAGGCATTAAATGATGACATGACATTACCTAAGGACACACAAGCCCCAAGTTCATCTTCAAAAATCAAACTCCCGGGGACAAAGAGAAAAGAAAACTTGACTGGCAAGAGGAAGAATGCGAGGAAAAAAGGATCGAATCCGTCTCCTATTCCTCCAACAGAAATGACAGAATTGACTGAAGCAATGATACTTGAATCTAACATGTCATGGAGAAGATCCTTAAATTTTGATATCGGAAATGTAGGCAGAGAAAATTTAGATTTGGACATTGGGAAGGAAAATATGGTGTTGGAGGAAAGAAAAGTAGGTCCCACCTATAAAGACACTTGGTTGAAAGAGGCAGTAAATATTTGCATGTCATTACCTGAGGAAACCCAACACCCAAGTACGTCTATTTCAAAATGCACTTCCCCTGGGGCAAAGCTGAATGCCAACTCTGTAGAGAAAAAAAACAAAAAAGGCCGGGCAACTGCTTGGGGTGGAAACATAAGTAATAGTCAAAGTTCATCAATAAGGTTACAAATGGTTGGCTCAAAGAGAAAACATTCTGATACCTTTAATCGTGCAGATGACAGCAGCATGAATCTGATTGGAGTGCAATATAATGGACTGCCCTCATACCAACACCTAAGTACGTCTATTTCAAAATGCACTTCCCCTGGGGCAAAGCTGAATGCCAACTCTGTAGAGAAGAAAAACAAAAAAATCCGGGCAACTGCTCGGGGTGGAAACATCAGTAATAGTCAAAGTTCATCAATAGGGTTACAAATGGTTGGTTCAAAGAGAAAACATTCTGGTACCTTTAATCGTGCAGATGACAGCAGCTTGAATCTGATTGGAGTGCAATATAATGGACTGCCCTCATACCACACTAGCCTTTGCCTTCAGTTTCCAAAAATACAGAAGAAAAGGAGAACCGAAAAGGGGAATGCAACAAAAGAAGTCCAACTGACATGCCCTCAGGAAGATGCTCTAGGACATCCATATGCATCAAGCTCCAGCTGCTGGACTTATGGTTCTGGATATAATACAGCTAGAGTCCCAGCCACAAGTATTGATAATACTCAAACATTCAACGAGTTTCTCTTGTCTTTGAAAAGGCTGGCAGAAACATCTCAAACCTCTACTTGTGATCGTGGTTCTCTAACTAGAATTAGAAACTGTGATACTGAACCAAATTATACAGCAAAACAAGTGGGTGTCCCTGGCAAAGAAACATTTGGGGATGCAATTGGTGCTTTAGTTGCAGAGACATGTACACCACCCACAAAAAAGAGGCAGAATAGAAAGAAAAGTGTTCTTTCCAGTTCAGCACATTCTACCACAAATGAGATGCTACACCACCATAATTTTACATTGGAAAATTGCCCTCTGCCAATGGGGAAGCCATCAGACATTGTTCCTGAAGTACTATGGAACACCATGAACAATATTGATGCATTAACATTGCAATTTAGACAGCTAAACTTAAACGCAGAAGCCAGAGACCTTGCATTTCATGAGGAGAATGCACTTGTCCCTTATAAACAGAAAAACAGCCTTATCCATGGAGATGGGGTCATCGTTCCCTTTCACATTAAGAAACAGCATCTACGACCAAAGGTCAACCTTGATGATGAGACTGATAGAGTGTGGAAGCTTTTGCTGTTAGATATAAACAGTCATGGCATTGATGGAACAGATGAAGATAAGGCCAAGTGGTGGGAAGAAGAACGAAATGTGTTCCGAGGACGAGCCGACTCTTTTATTGCACGAATGCATCTTGTACAAGGAGACAGACGATTTTCTCGATGGAAAGGATCAGTTGTGGATTCAGTGGTTGGAGTTTTCCTCACCCAAAATGTCACTGACCATCTTTCCAGCTCTGCATTCATGTCCCTTGCTGCTCGATTTCCAAAAAATTCAAGCAGCATGTGCAAAAGACACCATAAAGAAGACACAAGGCTGGTAGTCAACGAACCACAAGTGCATATAGTGGAACCGGAAGAGAGCACAGAATGGGATGTAAAATTATTGAATCAATCTGTTTATGACCAGACTTCTACAATAGATATGGCTGAACATTCTGGAGAAAAAGAAGCCGTCAACAGCAATGAATCCTGTGGAACTCCCAGCAGTGTAATTAGCTTAACAGATGAATCAAACTCCAGATTGTCAGAATTACCTCAAAAGAATATTAAGGAACACTGTAGTCCTACGAGGAGTGGAATACTTAGTGCTACAATTGAGGAAGGAGAAGAAAAATCATGTTACAATGGTGATAGGAAAGAGTTAAATGACATAGTTTCATCCCAAGGCTCTGTTTTTTCCTCTCAAATATCTGGAGATTTTTCAAATGATCAAAATCCTGAGAAAATAGGATCATGCTCAGATAGCAACTCAGAAGTAGAAGTTCTGTCCAGCACAGCAAAGTACAACCATTTTGGTAGCAACACTTCCTTCAGTAAACTCCTTGAAATGGTTAGTTCGACCAAGTTTTATGAAGATAACAGTCAAAAAAGCGAATCAATTGAAAACTCAGGAATGCTTGAAGTTAACGGCTTTGATCCTTTCAAAACAGAAGCATCAACAAGTGACTTAAAGAAAAAGGATGAAAATGGCATGAACAGATCTAGTCTTCAAACAACAGAACCTGCAGGCCAAGTTGCAATTACCCATTCTCAAAGTATTGCATCTCAAGTCCATCCTCGGGAACAAAGCAATCACCAGCAGCAAAGCTTTTTCAACATTTCTGGACAAACTCAAGATCTTATGCAGAAAGAAAGGGGGTCAGGTCTTGGTGAGCAAAAAAATGCCACGAGGAATGGAACCAATGAGATAAGTTCTGCCCCAATAAAATTAAAGACCAAGGAACAAGGAAAAGAAAAAAAGGATGATTTTAACTGGGATAGTTTAAGAATTGATGCACAGGCTAAGGCTGGCAAAAGAGAAAAGACAGAAAACACCATGGATTCTTTGGACTGGGATGCTGTGAGATGTGCAGATGTCAGTGAAATCGCTGAGACCATCAAAGAACGGGGCATGAACAACAGGCTTGCTGAACGTATTAAGAATTTCCTGAATCGACTGGTTGAAGAACATGAAAGCATTGACCTTGAATGGCTTAGAGACGTTCCACCTGACAAAGCAAAAGAATACTTGCTCAGCATAAGAGGATTGGGATTGAAAAGTGTGGAATGCGTGCGGCTTTTAACACTGCACCATCTTGCCTTCCCGGTAGACACAAATGTCGGACGTATTGCCGTACGACTGGGATGGGTGCCTCTGCAGCCACTGCCTGAGTCACTGCAGTTGCATCTCCTAGAATTGTACCCGGTGTTGGAGTCAATACAAAAATATCTCTGGCCTCGACTGTGCAAGCTAGATCAGGAAACACTATATGAGCTACATTACCAGATGATTACATTTGGAAAGGTCTTCTGTACAAAAAGCAAACCAAATTGTAATGCATGCCCAATGAGAGCAGAATGTAGACACTTTGCTAGTGCATTTGCAAGTGCAAGGTTTGCACTGCCTGGACCAGAGCAGAAGAGTATAGTTAGCACAACTGGAAATAGTGTGATTAACCAGAACCCATCTGAAATCATCAGTCAGTTGCACTTGCCTCCACCTGAGAACACAGCCCAAGAAGATGAAATTCAACTAACAGAAGTGAGCAGACAATTGGAATCAAAATTTGAAATAAATATTTGCCAACCTATCATTGAAGAGCCCAGAACTCCAGAGCCAGAATGCTTGCAAGAATCACAAACTGATATAGAGGATGCTTTCTATGAGGATTCAAGTGAAATTCCAACCATCAATCTTAACATAGAAGAGTTCACTCTGAATTTACAAAATTACATGCAAGAAAATATGGAACTTCAAGGAGGTGAAATGTCAAAGGCATTGGTTGCTTTGAATCCACAAGCTGCTTCCATTCCTATGCCCAAGCTAAAGAATGTGGGCCGATTACGAACAGAGCATTGTGTTTATGAACTCCCAGATACGCATCCTCTTCTACAAGGGTGGGACACACGAGAGCCTGATGATCCAGGCAAATATCTTCTTGCTATATGGACTCCAGGTGAGACCGCAAATTCTATACAGCCACCAGAAAGCAATTGCAGCTCTCAAGAAGAATGTGGCCAACTCTGTAATGAGAAGGAATGTTTCTCATGCAACAGTTTCCGTGAAGCAAATTCTCAGATAGTTAGAGGGACACTCCTGATACCTTGTCGAACAGCTATGCGGGGGAGCTTTCCACTGAATGGCACCTATTTCCAAGTCAATGAGGTATTTGCTGACCATGACTCAAGTCTCAACCCAATTAGTGTGCCCCGAAGTTGGATCTGGAACCTCAACAGGCGAACAGTATATTTTGGGACCTCCGTAACAACAATATTTAAAGGTTTAACAACACAAGAAACTCAACAATGCTTTTGGAGAGGGTATATCTGTGTGCGGGGGTTTGACAGGGAAGCACGAGCACCCCGCCCTCTGATGGCTAGACTACATTTCCCAGCTAGCAAGTTGGCCGCCAAGACCAAAGAGAAAGCAAAAAAGGAGTCGAATTCAGCAAAATCACGAGCATCCAAACCAAATCCAGAACAGCCGGAATTGATTGCCAACAGAGACAAATGA
Predicted protein sequences of Glyma10g07601
>Glyma10g07601.1   sequence type=predicted peptide   gene model=Glyma10g07601   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVGEMDRKETQVEVPWSPGPPIKPVPMKPVPIYMPEERNQMDHLANGAVACAEFSLGQDKIGGSGDGSNVAGYSGKTCEQIVSDAVSSYRKLGFCEQLLAVEAESRNISVTQGNNDGLKNPFVPPLVLDNVLDPQETYIACCSMKSSQDTSYILDNANKEESRQIASMQVNMEEKDPGREERNVTANKLDNNVAPNSKELCDPAMEFAAVSSPVKENHNPDNGSSHDTDLNKTPQQKPRRRKHRPKVIKEGKPKRTRKPATPKPVQSKEKQPVKRKYVRKNALNKTSTPPTEETGELTKEMSCKRSLNFDIGTTYESSAAIENTRTLLGKENGVLVQETNVGPAFDLNTSMKQASNSYMSLPEDTQALNTSSGRKSSGTKPEENPPPKRKYVKRKGVNKTSAPPIEVPGNLTEETTSASAQTSCTGSINFDERASEQSYAVKENPTGHPGSEIGVVMKEMNVGLAYDLNTSMKQALNDDMTLPKDTQAPSSSSKIKLPGTKRKENLTGKRKNARKKGSNPSPIPPTEMTELTEAMILESNMSWRRSLNFDIGNVGRENLDLDIGKENMVLEERKVGPTYKDTWLKEAVNICMSLPEETQHPSTSISKCTSPGAKLNANSVEKKNKKGRATAWGGNISNSQSSSIRLQMVGSKRKHSDTFNRADDSSMNLIGVQYNGLPSYQHLSTSISKCTSPGAKLNANSVEKKNKKIRATARGGNISNSQSSSIGLQMVGSKRKHSGTFNRADDSSLNLIGVQYNGLPSYHTSLCLQFPKIQKKRRTEKGNATKEVQLTCPQEDALGHPYASSSSCWTYGSGYNTARVPATSIDNTQTFNEFLLSLKRLAETSQTSTCDRGSLTRIRNCDTEPNYTAKQVGVPGKETFGDAIGALVAETCTPPTKKRQNRKKSVLSSSAHSTTNEMLHHHNFTLENCPLPMGKPSDIVPEVLWNTMNNIDALTLQFRQLNLNAEARDLAFHEENALVPYKQKNSLIHGDGVIVPFHIKKQHLRPKVNLDDETDRVWKLLLLDINSHGIDGTDEDKAKWWEEERNVFRGRADSFIARMHLVQGDRRFSRWKGSVVDSVVGVFLTQNVTDHLSSSAFMSLAARFPKNSSSMCKRHHKEDTRLVVNEPQVHIVEPEESTEWDVKLLNQSVYDQTSTIDMAEHSGEKEAVNSNESCGTPSSVISLTDESNSRLSELPQKNIKEHCSPTRSGILSATIEEGEEKSCYNGDRKELNDIVSSQGSVFSSQISGDFSNDQNPEKIGSCSDSNSEVEVLSSTAKYNHFGSNTSFSKLLEMVSSTKFYEDNSQKSESIENSGMLEVNGFDPFKTEASTSDLKKKDENGMNRSSLQTTEPAGQVAITHSQSIASQVHPREQSNHQQQSFFNISGQTQDLMQKERGSGLGEQKNATRNGTNEISSAPIKLKTKEQGKEKKDDFNWDSLRIDAQAKAGKREKTENTMDSLDWDAVRCADVSEIAETIKERGMNNRLAERIKNFLNRLVEEHESIDLEWLRDVPPDKAKEYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQETLYELHYQMITFGKVFCTKSKPNCNACPMRAECRHFASAFASARFALPGPEQKSIVSTTGNSVINQNPSEIISQLHLPPPENTAQEDEIQLTEVSRQLESKFEINICQPIIEEPRTPEPECLQESQTDIEDAFYEDSSEIPTINLNIEEFTLNLQNYMQENMELQGGEMSKALVALNPQAASIPMPKLKNVGRLRTEHCVYELPDTHPLLQGWDTREPDDPGKYLLAIWTPGETANSIQPPESNCSSQEECGQLCNEKECFSCNSFREANSQIVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPISVPRSWIWNLNRRTVYFGTSVTTIFKGLTTQETQQCFWRGYICVRGFDREARAPRPLMARLHFPASKLAAKTKEKAKKESNSAKSRASKPNPEQPELIANRDK*






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