Glyma10g07590 - SoyBase

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Report for Sequence Feature Glyma10g07590

Feature Type:	gene_model
Chromosome:	Gm10
Start:	6320521
stop:	6331239
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g07590

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G41480	AT	Annotation by Michelle Graham. TAIR10: Folylpolyglutamate synthetase family protein \| chr5:16595967-16598523 FORWARD LENGTH=530	SoyBase	E_val: 0	ISS
GO:0006730	GO-bp	Annotation by Michelle Graham. GO Biological Process: one-carbon metabolic process	SoyBase	N/A	ISS
GO:0009058	GO-bp	Annotation by Michelle Graham. GO Biological Process: biosynthetic process	SoyBase	N/A	ISS
GO:0009396	GO-bp	Annotation by Michelle Graham. GO Biological Process: folic acid-containing compound biosynthetic process	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0005759	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial matrix	SoyBase	N/A	ISS
GO:0004326	GO-mf	Annotation by Michelle Graham. GO Molecular Function: tetrahydrofolylpolyglutamate synthase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008841	GO-mf	Annotation by Michelle Graham. GO Molecular Function: dihydrofolate synthase activity	SoyBase	N/A	ISS
GO:0016874	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ligase activity	SoyBase	N/A	ISS
KOG2525	KOG	Folylpolyglutamate synthase	JGI		ISS
PTHR11136	Panther	FOLYLPOLYGLUTAMATE SYNTHASE-RELATED	JGI		ISS
PF08245	PFAM	Mur ligase middle domain	JGI		ISS
UniRef100_G7L1S8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Folylpolyglutamate synthase n=1 Tax=Medicago truncatula RepID=G7L1S8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233CC21	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233CC21 related cluster n=1 Tax=unknown RepID=UPI000233CC21	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g07590

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g07590 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g065800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g07590

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g07590

Limit To All Plant Sequences

>Glyma10g07590.1   sequence type=CDS   gene model=Glyma10g07590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTCTGTCGTCGATACGCAGAGGATTCACTAGTCGAGTAGGTCCCATACGAACCCTCTCTTCGCACTCCGAAATGAAAGACTTTCTGGATTACCTCGACTCCCTCAAAAATTACGAGAAATCAGGAGTTCCCAAAGGTGCCGGCACCGATTCCAGCGACGGTTTCGATCTTGGTAGAATGAGACGCCTCATGGAGCGTTTTGGTAACCCTCACTCCAAGTTCAAGGCTGTTCATATTGCTGGAACTAAGGGGAAGGGATCAACAGCTGCTTTTGTATCTAATATTCTGAGGAATGAAGGCTATTCTGTTGGTTGTTACACCAGTCCACATATCCTGACCATCCGGGAGCGCATTTTACTGGGAAAATCCGGCCATCCGGTGTCAGCGAAATTGTTGAATGATCTCTTTCGTAGGATCAAGCCCGATATTGACCAGGCAATGAAAGAGGAAAATGGTTGCATAAGCCATTTTGAGGTTTTCACTACCATGGCATTCCTCCTATTTGCTGATGAGAATGTTGACATTGCTGTTATTGAGGCTGGGTTAGGGGGTGCACGAGATGCAACAAATATAATATCCAGCTCTGGGCTTGTTGCATCAGTCATAACCACTGTAGGTGAAGAACATTTGGCAGCTCTTGGGGGTTCTTTGGAAACAATTGCAATGGCAAAGGCAGGAATCATAAAACAAGACCGCCCATTGGTGTTGGGTGGCCCATTTGTCCCTCATATTGAGCGCATTATTCGAGACAAAGCAGTAGCCATGGACTCACCTGTAGTGTCAGCATACGATACTGGAAATAAGTGTACTGTGAAAAGTTTCAGCATACGCAATGGAAGGCCTTGTCAAATTTGTGATATACTGATACAAGTTGTGAAAGACATGAAAATGTCCTGTAAGTTACATGATGTGAAGTTGCAAATGCTTGGAGATCACCAACTTCAAAATGCAGCTACTGCTACTTGTGTGGCACTTGTTCTTCGCAATTTAGGATGGAGTATTTCTGATGAATCTATTAGGTATGGTTTAGAGGATACATACCTTCTTGGAAGGAGTCAATTTCTAACATCTGAAGAAGCTGAGGTATTAGGACTTACTGGATCAACAGTACTGCTTGATGGAGCCCACACCAAAGAATCTGCCAAAGCTCTGATGAATACCATAAGGATGGCATTTCCCAAGGCTCAATTGGTTTTTGTTGTTGCAATGGCAAGTGACAAAGATCATGTGGGATTTGCTCGAGAGATTCTCTCAGGTGTACATGTGGAGACTGTCCTTTTGACAGAAGCTGCTATTGCTGGAGGTGTAACTCGAACAACACCAGCATCTTTGTTGAGAGATTCTTGGATTAAAGCTTCTGATGAGCTTGGCATTGGTATTGTTCATGATGGAATGGCAGAATACAGTGAATTATTAAAGGAACAACCAGTAGGCTCTGAAAGCAATTTGGGTGATGGTAAGACCGTGTTGGCTACTGTGCCATGTTTAAAGGGTTGTTTGAGAAGCGCAAATCAGATTCTAAGCAGACGAGGGGATGAAAAGCGTGTTATTGTCTTCACCGGGTCTCTGCATATTGCAGCTTCAGTCTTAGCTTCTCTTGCTGGTTAA

Predicted protein sequences of Glyma10g07590

Limit To All Plant Sequences

>Glyma10g07590.1   sequence type=predicted peptide   gene model=Glyma10g07590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLSSIRRGFTSRVGPIRTLSSHSEMKDFLDYLDSLKNYEKSGVPKGAGTDSSDGFDLGRMRRLMERFGNPHSKFKAVHIAGTKGKGSTAAFVSNILRNEGYSVGCYTSPHILTIRERILLGKSGHPVSAKLLNDLFRRIKPDIDQAMKEENGCISHFEVFTTMAFLLFADENVDIAVIEAGLGGARDATNIISSSGLVASVITTVGEEHLAALGGSLETIAMAKAGIIKQDRPLVLGGPFVPHIERIIRDKAVAMDSPVVSAYDTGNKCTVKSFSIRNGRPCQICDILIQVVKDMKMSCKLHDVKLQMLGDHQLQNAATATCVALVLRNLGWSISDESIRYGLEDTYLLGRSQFLTSEEAEVLGLTGSTVLLDGAHTKESAKALMNTIRMAFPKAQLVFVVAMASDKDHVGFAREILSGVHVETVLLTEAAIAGGVTRTTPASLLRDSWIKASDELGIGIVHDGMAEYSELLKEQPVGSESNLGDGKTVLATVPCLKGCLRSANQILSRRGDEKRVIVFTGSLHIAASVLASLAG*

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